Aliases for ENSG00000253858 Gene

Subcategory (RNA class) for ENSG00000253858 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000253858 Gene

  • Novel Transcript 5
  • NONHSAG042202 92
  • Lnc-KCNMB1-1 168
  • AC008619.1 5

External Ids for ENSG00000253858 Gene

Previous GeneCards Identifiers for ENSG00000253858 Gene

  • GC05M169911

Summaries for ENSG00000253858 Gene

GeneCards Summary for ENSG00000253858 Gene

ENSG00000253858 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000253858 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000253858 Gene

Genomics for ENSG00000253858 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000253858 Gene

Promoters and enhancers for ENSG00000253858 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J170571 Enhancer 0.9 FANTOM5 ENCODE 11.5 -85.7 -85728 2.2 CTCF TCF12 FOXA2 POLR2A NR3C1 FOSL2 BATF FOXA1 IRF4 POU2F2 ENSG00000253858 KCNIP1-OT1 KCNMB1 KCNIP1 piR-35674-434 piR-58933
GH05J170596 Enhancer 0.9 Ensembl ENCODE 11 -111.4 -111417 3.2 FOS REST CUX1 CTBP1 MXI1 GATA3 MBD2 NEUROD1 FOSL1 ZFHX2 ENSG00000253858 GABRP ENSG00000253348 piR-58933 piR-35674-434 KCNIP1
GH05J170552 Enhancer 0.9 ENCODE CraniofacialAtlas 11.1 -66.6 -66552 1.8 USF1 ZIC2 REST SAP30 CTBP1 HDAC2 RBM25 NR2F2 NONO BCOR ENSG00000253858 piR-35674-434 piR-58933 KCNIP1
GH05J170554 Enhancer 0.7 Ensembl 11.1 -68.4 -68394 1.6 ZSCAN5C OSR2 NR2F2 WT1 ZBTB17 ZNF184 ZNF335 KLF17 ZNF843 ZNF2 ENSG00000253858 piR-35674-434 piR-58933 KCNIP1
GH05J170404 Enhancer 0.7 FANTOM5 Ensembl 10.3 +80.9 80906 3.8 CTCF TEAD4 RFX1 POLR2A SPI1 RAD21 ZMYM3 BHLHE40 CEBPB EBF1 LCP2 C5orf58 ENSG00000253858 KCNIP1-OT1 KCNMB1 KCNIP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253858 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000253858 Gene

Genomic Locations for ENSG00000253858 Gene
chr5:170,483,806-170,486,407
(GRCh38/hg38)
Size:
2,602 bases
Orientation:
Minus strand
chr5:169,910,810-169,913,411
(GRCh37/hg19)
Size:
2,602 bases
Orientation:
Minus strand

Genomic View for ENSG00000253858 Gene

Genes around ENSG00000253858 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000253858 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253858 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253858 Gene

Proteins for ENSG00000253858 Gene

Post-translational modifications for ENSG00000253858 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253858 Gene

Domains & Families for ENSG00000253858 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253858 Gene

Function for ENSG00000253858 Gene

Phenotypes From GWAS Catalog for ENSG00000253858 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253858 Gene

Localization for ENSG00000253858 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253858 Gene

Pathways & Interactions for ENSG00000253858 Gene

PathCards logo

SuperPathways for ENSG00000253858 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000253858 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000253858 Gene

Drugs & Compounds for ENSG00000253858 Gene

No Compound Related Data Available

Transcripts for ENSG00000253858 Gene

mRNA/cDNA for ENSG00000253858 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253858 Gene

No ASD Table

Relevant External Links for ENSG00000253858 Gene

GeneLoc Exon Structure for
ENSG00000253858

Expression for ENSG00000253858 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000253858 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000253858 Gene

This gene is overexpressed in Spleen (x5.6) and Heart - Left Ventricle (x5.5).
genes like me logo Genes that share expression patterns with ENSG00000253858: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253858 Gene

Orthologs for ENSG00000253858 Gene

Evolution for ENSG00000253858 Gene

ENSEMBL:
Gene Tree for ENSG00000253858 (if available)
TreeFam:
Gene Tree for ENSG00000253858 (if available)

No data available for Orthologs for ENSG00000253858 Gene

Paralogs for ENSG00000253858 Gene

No data available for Paralogs for ENSG00000253858 Gene

Variants for ENSG00000253858 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253858 Gene

Disorders for ENSG00000253858 Gene

No disorders were found for ENSG00000253858 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000253858 Gene

Publications for ENSG00000253858 Gene

No publications were found for ENSG00000253858 Gene.

No data available for Mastermind for ENSG00000253858 Gene

Products for ENSG00000253858 Gene

Sources for ENSG00000253858 Gene