Aliases for ENSG00000253561 Gene

Subcategory (RNA class) for ENSG00000253561 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000253561 Gene

  • Novel Transcript 5
  • NONHSAG051344 92
  • HSALNG0068767 167
  • Lnc-WISP1-3 168
  • AC133634.1 5

External Ids for ENSG00000253561 Gene

Previous GeneCards Identifiers for ENSG00000253561 Gene

  • GC08P134783

Summaries for ENSG00000253561 Gene

GeneCards Summary for ENSG00000253561 Gene

ENSG00000253561 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000253561 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000253561 Gene

Genomics for ENSG00000253561 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000253561 Gene

Promoters and enhancers for ENSG00000253561 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J133767 Enhancer 0.9 Ensembl ENCODE 5.2 -2.7 -2709 7.4 ZNF217 TEAD4 RFX1 CHD1 GATAD2B CTBP1 NR2F2 SIN3A ESRRA MYC ENSG00000253561 piR-56759-566
GH08J133531 Enhancer 1 ENCODE dbSUPER 5 -239.4 -239436 0.2 EP300 RELA MEF2C RCOR1 TRIM22 BCL11A TCF12 CBFB ZNF384 ZNF207 ENSG00000253561 RF00017-7333 ENSG00000283197 lnc-NDRG1-7 ST3GAL1
GH08J133255 Enhancer 0.9 Ensembl ENCODE dbSUPER 4.7 -512.3 -512291 8.2 NR2F2 RBM22 SPI1 POLR2A IKZF1 RAD21 RXRA MAX HNF4A REST NDRG1 ENSG00000253561 lnc-SLA-2 HSALNG0068729 lnc-NDRG1-1
GH08J133529 Enhancer 0.6 ENCODE dbSUPER 5.3 -241.1 -241145 1.5 NR2F2 CEBPB JUND RXRA HNF4A SP1 ST3GAL1 ENSG00000253561 ENSG00000283197 RF00017-7333 lnc-NDRG1-7
GH08J133793 Enhancer 0.5 ENCODE 0.4 +23.1 23055 2.3 OSR2 WT1 STAT3 FOS HNF1A FOXA2 FOXA1 ZSCAN29 ZBTB44 ENSG00000254313 ENSG00000253561 HSALNG0068771
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253561 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000253561 Gene

Genomic Locations for ENSG00000253561 Gene
chr8:133,771,409-133,814,537
(GRCh38/hg38)
Size:
43,129 bases
Orientation:
Plus strand
chr8:134,783,652-134,826,780
(GRCh37/hg19)
Size:
43,129 bases
Orientation:
Plus strand

Genomic View for ENSG00000253561 Gene

Genes around ENSG00000253561 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000253561 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253561 Gene

Proteins for ENSG00000253561 Gene

Post-translational modifications for ENSG00000253561 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253561 Gene

Domains & Families for ENSG00000253561 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253561 Gene

Function for ENSG00000253561 Gene

Phenotypes From GWAS Catalog for ENSG00000253561 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253561 Gene

Localization for ENSG00000253561 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253561 Gene

Pathways & Interactions for ENSG00000253561 Gene

PathCards logo

SuperPathways for ENSG00000253561 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000253561 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000253561 Gene

Drugs & Compounds for ENSG00000253561 Gene

No Compound Related Data Available

Transcripts for ENSG00000253561 Gene

mRNA/cDNA for ENSG00000253561 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253561 Gene

No ASD Table

Relevant External Links for ENSG00000253561 Gene

GeneLoc Exon Structure for
ENSG00000253561

Expression for ENSG00000253561 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000253561 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000253561 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000253561: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253561 Gene

Orthologs for ENSG00000253561 Gene

Evolution for ENSG00000253561 Gene

ENSEMBL:
Gene Tree for ENSG00000253561 (if available)
TreeFam:
Gene Tree for ENSG00000253561 (if available)

No data available for Orthologs for ENSG00000253561 Gene

Paralogs for ENSG00000253561 Gene

No data available for Paralogs for ENSG00000253561 Gene

Variants for ENSG00000253561 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253561 Gene

Disorders for ENSG00000253561 Gene

No disorders were found for ENSG00000253561 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000253561 Gene

Publications for ENSG00000253561 Gene

No publications were found for ENSG00000253561 Gene.

No data available for Mastermind for ENSG00000253561 Gene

Products for ENSG00000253561 Gene

Sources for ENSG00000253561 Gene