Aliases for ENSG00000253270 Gene

Data sources for ENSG00000253270 Gene:

Subcategory (RNA class) for ENSG00000253270 Gene

lncRNA

Aliases for ENSG00000253270 Gene

External Ids for ENSG00000253270 Gene

Previous GeneCards Identifiers for ENSG00000253270 Gene

  • GC08P019536

Summaries for ENSG00000253270 Gene

GeneCards Summary for ENSG00000253270 Gene

ENSG00000253270 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000253270 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000253270 Gene

Genomics for ENSG00000253270 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000253270 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J019675 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 257.5 -0.9 -913 5.3 FEZF1 BRCA1 CEBPB FOXA2 ZNF639 EP300 PRDM1 ZNF843 STAT3 JUND ENSG00000253270 CSGALNACT1 HSALNG0063764 lnc-SLC18A1-3 SH2D4A
GH08J019681 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE dbSUPER 0.7 +3.7 3672 2.3 SCRT1 GATA2 PRDM10 CEBPB FOS WT1 CSGALNACT1 ENSG00000253270 RF00017-6866 lnc-SLC18A1-3 SH2D4A
GH08J019660 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.8 -12777 11.2 CEBPA BRCA1 HOMEZ KDM6A THAP11 CEBPB FOXA2 ZNF639 MAX SMAD4 CSGALNACT1 SH2D4A ENSG00000253270 HSALNG0063764 lnc-SLC18A1-3
GH08J019695 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +18.4 18360 2.4 SP1 BCL11A IRF4 MAFF EBF1 CBFB SPI1 BHLHE40 POLR2A MAFK CSGALNACT1 SH2D4A RF00017-6866 ENSG00000253270 lnc-SLC18A1-3
GH08J019686 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.4 +8.5 8546 0.5 MAFK ATF2 BHLHE40 ATF1 CREB1 ATF7 CEBPB FOS CSGALNACT1 ENSG00000253270 RF00017-6866 lnc-SLC18A1-3 SH2D4A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253270 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000253270 Gene

Latest Assembly
chr8:19,678,571-19,689,530
(GRCh38/hg38)
Size:
10,960 bases
Orientation:
Plus strand

Previous Assembly
chr8:19,536,083-19,546,445
(GRCh37/hg19 by Ensembl)
Size:
10,363 bases
Orientation:
Plus strand

Genomic View for ENSG00000253270 Gene

Genes around ENSG00000253270 on UCSC Golden Path with GeneCards custom track
ENSG00000253270 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000253270 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253270 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253270 Gene

Proteins for ENSG00000253270 Gene

Post-translational modifications for ENSG00000253270 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253270 Gene

Domains & Families for ENSG00000253270 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253270 Gene

Function for ENSG00000253270 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253270 Gene

Localization for ENSG00000253270 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253270 Gene

Pathways & Interactions for ENSG00000253270 Gene

PathCards logo

SuperPathways for ENSG00000253270 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000253270 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000253270 Gene

Drugs & Compounds for ENSG00000253270 Gene

No Compound Related Data Available

Transcripts for ENSG00000253270 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000253270 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000212D4B_9606 lncRNA 469 2

Ensembl: ENST00000519803 (view in UCSC) ,

LNCipedia: lnc-INTS10-2:1,

URS00008BA5E4_9606 lncRNA 1041 2

LNCipedia: lnc-INTS10-2:2,

NONCODE: NONHSAT125382.2,

URS00009B50AA_9606 lncRNA 467 1

NONCODE: NONHSAT215495.1,

ENSG00000253270 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253270 Gene

No ASD Table

Relevant External Links for ENSG00000253270 Gene

GeneLoc Exon Structure for
ENSG00000253270

No data available for mRNA/cDNA for ENSG00000253270 Gene

Expression for ENSG00000253270 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000253270 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000253270 Gene

This gene is overexpressed in Heart - Left Ventricle (x39.4), Prostate (x4.8), and Heart - Atrial Appendage (x4.7).
genes like me logo Genes that share expression patterns with ENSG00000253270: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253270 Gene

Orthologs for ENSG00000253270 Gene

Evolution for ENSG00000253270 Gene

ENSEMBL:
Gene Tree for ENSG00000253270 (if available)
TreeFam:
Gene Tree for ENSG00000253270 (if available)

No data available for Orthologs for ENSG00000253270 Gene

Paralogs for ENSG00000253270 Gene

No data available for Paralogs for ENSG00000253270 Gene

Variants for ENSG00000253270 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253270 Gene

Disorders for ENSG00000253270 Gene

Additional Disease Information for ENSG00000253270

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000253270 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000253270 Gene

Publications for ENSG00000253270 Gene

No publications were found for ENSG00000253270 Gene.

No data available for Mastermind for ENSG00000253270 Gene

Products for ENSG00000253270 Gene

Sources for ENSG00000253270 Gene