Aliases for ENSG00000253172 Gene

Subcategory (RNA class) for ENSG00000253172 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000253172 Gene

  • Novel Transcript 5
  • HSALNG0046671 169
  • NONHSAG042257 94
  • Lnc-NKX2-5-2 170
  • AC008378.1 5

External Ids for ENSG00000253172 Gene

Previous GeneCards Identifiers for ENSG00000253172 Gene

  • GC05M172571

Summaries for ENSG00000253172 Gene

GeneCards Summary for ENSG00000253172 Gene

ENSG00000253172 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000253172 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000253172 Gene

Genomics for ENSG00000253172 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000253172 Gene

Promoters and enhancers for ENSG00000253172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173143 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 750.6 +0.2 199 1.9 ZNF785 SIN3A ZNF24 SP1 CTCF SREBF1 ZBTB6 RBPJ POLR2A USF2 BNIP1 ENSG00000253172 CREBRF ENSG00000253683 CDC42P5 DUSP1 SH3PXD2B ATP6V0E1 ERGIC1 ENSG00000204758
GH05J172763 Promoter/Enhancer 3.1 VISTA EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.6 +372.8 372840 16.8 ZNF785 SIN3A ZNF24 SP1 ZBTB40 CTCF SREBF1 ZBTB6 FOXA1 LCORL DUSP1 LOC105377730 CREBRF UBTD2 ERGIC1 SH3PXD2B KLF3P1 CDC42P5 ENSG00000253628 ENSG00000253172
GH05J173322 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.6 -182.5 -182488 9.4 PPP1R10 ZNF785 SP1 CTCF ZBTB6 MLX RBPJ SMARCE1 POLR2A USF2 lnc-BNIP1-5 STC2 lnc-NKX2-5-7 SH3PXD2B ENSG00000253955 CREBRF ENSG00000253447 ENSG00000253172 ENSG00000253628 RPL12P22
GH05J172958 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.6 +185.4 185427 3.1 ZNF785 SIN3A SP1 ZBTB40 CTCF SIX5 SMARCE1 POLR2A CREB1 HCFC1 ENSG00000204758 LOC100268168 RPL26L1 KLF3P1 ENSG00000253683 ENSG00000253628 ENSG00000253172 UBTD2 EFCAB9 SH3PXD2B
GH05J172894 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +241.3 241339 18.6 ZNF785 SIN3A CTCF SREBF1 MLX RBPJ SMARCE1 TCF7L2 NR2F6 ZNF217 DUSP1 KLF3P1 UBTD2 BOD1 SH3PXD2B ERGIC1 ENSG00000253628 ENSG00000253172 BNIP1 EFCAB9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253172 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000253172 Gene

Genomic Locations for ENSG00000253172 Gene
chr5:173,144,162-173,145,039
(GRCh38/hg38)
Size:
878 bases
Orientation:
Minus strand
chr5:172,571,165-172,572,042
(GRCh37/hg19)
Size:
878 bases
Orientation:
Minus strand

Genomic View for ENSG00000253172 Gene

Genes around ENSG00000253172 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000253172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253172 Gene

Proteins for ENSG00000253172 Gene

Post-translational modifications for ENSG00000253172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253172 Gene

Domains & Families for ENSG00000253172 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253172 Gene

Function for ENSG00000253172 Gene

Phenotypes From GWAS Catalog for ENSG00000253172 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253172 Gene

Localization for ENSG00000253172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253172 Gene

Pathways & Interactions for ENSG00000253172 Gene

PathCards logo

SuperPathways for ENSG00000253172 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000253172 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000253172 Gene

Drugs & Compounds for ENSG00000253172 Gene

No Compound Related Data Available

Transcripts for ENSG00000253172 Gene

mRNA/cDNA for ENSG00000253172 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :
(2) NONCODE transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253172 Gene

No ASD Table

Relevant External Links for ENSG00000253172 Gene

GeneLoc Exon Structure for
ENSG00000253172

Expression for ENSG00000253172 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000253172 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000253172 Gene

This gene is overexpressed in Testis (x43.3), Skin - Not Sun Exposed (Suprapubic) (x5.3), and Pituitary (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000253172: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253172 Gene

Orthologs for ENSG00000253172 Gene

Evolution for ENSG00000253172 Gene

ENSEMBL:
Gene Tree for ENSG00000253172 (if available)
TreeFam:
Gene Tree for ENSG00000253172 (if available)

No data available for Orthologs for ENSG00000253172 Gene

Paralogs for ENSG00000253172 Gene

No data available for Paralogs for ENSG00000253172 Gene

Variants for ENSG00000253172 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253172 Gene

Disorders for ENSG00000253172 Gene

No disorders were found for ENSG00000253172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000253172 Gene

Publications for ENSG00000253172 Gene

No publications were found for ENSG00000253172 Gene.

No data available for External Links for ENSG00000253172 Gene

Products for ENSG00000253172 Gene

Sources for ENSG00000253172 Gene