Aliases for ENSG00000253125 Gene

Subcategory (RNA class) for ENSG00000253125 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000253125 Gene

  • Novel Transcript 5
  • NONHSAG049736.2 91
  • HSALNG0063935 164
  • Lnc-CCAR2-2 165
  • AC055854.1 5

External Ids for ENSG00000253125 Gene

Previous GeneCards Identifiers for ENSG00000253125 Gene

  • GC08P022548

Summaries for ENSG00000253125 Gene

GeneCards Summary for ENSG00000253125 Gene

ENSG00000253125 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000253125 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000253125 Gene

Genomics for ENSG00000253125 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000253125 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J022689 Promoter 0.5 Ensembl 600.7 -0.4 -449 0.2 ZSCAN4 EZH2 ENSG00000253125 MF281458 EGR3 BIN3
GH08J022688 Enhancer 0.3 Ensembl 600.7 -1.2 -1249 0.6 EZH2 ENSG00000253125 MF281458 EGR3 ENSG00000261026 BIN3
GH08J022691 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.1 3051 6.4 CREB1 PRDM10 ZNF629 ZNF512 SOX13 IKZF1 CTCF ZNF692 POLR2A BACH1 EGR3 LOC105379322 lnc-CCAR2-3 ENSG00000253200 FAM160B2 ENSG00000245025 LOXL2 BMP1 C8orf58 CCAR2
GH08J022700 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +13.1 13123 6 SP1 GATAD2A CTCF REST POLR2A BACH1 LARP7 STAT3 ZNF143 RELA ENSG00000287812 lnc-CCAR2-6 LOC107986926 XPO7 BIN3 CCAR2 ENSG00000253200 NPM2 TNFRSF10C PDLIM2
GH08J022715 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.3 +25.8 25782 1.7 SP1 CTCF JUND LARP7 RELA IKZF2 TRIM22 PKNOX1 MNT EED BIN3 PEBP4 TNFRSF10C PDLIM2 EGR3 TNFRSF10B PPP3CC lnc-CCAR2-6 LOC107986925 ENSG00000253125
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253125 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000253125 Gene

Genomic Locations for ENSG00000253125 Gene
chr8:22,690,150-22,798,616
(GRCh38/hg38)
Size:
108,467 bases
Orientation:
Plus strand
chr8:22,547,663-22,656,129
(GRCh37/hg19)
Size:
108,467 bases
Orientation:
Plus strand

Genomic View for ENSG00000253125 Gene

Genes around ENSG00000253125 on UCSC Golden Path with GeneCards custom track
ENSG00000253125 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000253125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253125 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253125 Gene

Proteins for ENSG00000253125 Gene

Post-translational modifications for ENSG00000253125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253125 Gene

Domains & Families for ENSG00000253125 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253125 Gene

Function for ENSG00000253125 Gene

Phenotypes From GWAS Catalog for ENSG00000253125 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253125 Gene

Localization for ENSG00000253125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253125 Gene

Pathways & Interactions for ENSG00000253125 Gene

PathCards logo

SuperPathways for ENSG00000253125 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000253125 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000253125 Gene

Drugs & Compounds for ENSG00000253125 Gene

No Compound Related Data Available

Transcripts for ENSG00000253125 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000253125 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BF90F_9606 lncRNA 1630 4

Ensembl: ENST00000521141 (view in UCSC) ,

LncBook: HSALNT0134097,

LNCipedia: lnc-CCAR2-2:10,

NONCODE: NONHSAT125513.2,

URS00008BD923_9606 lncRNA 570 4

Ensembl: ENST00000523627 (view in UCSC) ,

LncBook: HSALNT0134088,

LNCipedia: lnc-CCAR2-2:1,

NONCODE: NONHSAT125510.2,

URS0000D56E21_9606 lncRNA 2572 2

LncBook: HSALNT0134095,

LNCipedia: lnc-CCAR2-2:8,

URS0000D57647_9606 lncRNA 531 2

LncBook: HSALNT0134093,

LNCipedia: lnc-CCAR2-2:5,

URS0000D5A12D_9606 lncRNA 318 2

LncBook: HSALNT0134094,

LNCipedia: lnc-CCAR2-2:7,

ENSG00000253125 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ENSG00000253125 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253125 Gene

No ASD Table

Relevant External Links for ENSG00000253125 Gene

GeneLoc Exon Structure for
ENSG00000253125

Expression for ENSG00000253125 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000253125 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000253125 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x13.0) and Skin - Sun Exposed (Lower leg) (x6.6).
genes like me logo Genes that share expression patterns with ENSG00000253125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253125 Gene

Orthologs for ENSG00000253125 Gene

Evolution for ENSG00000253125 Gene

ENSEMBL:
Gene Tree for ENSG00000253125 (if available)
TreeFam:
Gene Tree for ENSG00000253125 (if available)

No data available for Orthologs for ENSG00000253125 Gene

Paralogs for ENSG00000253125 Gene

No data available for Paralogs for ENSG00000253125 Gene

Variants for ENSG00000253125 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253125 Gene

Disorders for ENSG00000253125 Gene

Additional Disease Information for ENSG00000253125

No disorders were found for ENSG00000253125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000253125 Gene

Publications for ENSG00000253125 Gene

No publications were found for ENSG00000253125 Gene.

No data available for Mastermind for ENSG00000253125 Gene

Products for ENSG00000253125 Gene

Sources for ENSG00000253125 Gene