Aliases for ENSG00000253065 Gene

Subcategory (RNA class) for ENSG00000253065 Gene

snoRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000253065 Gene

  • AC008705.1 5
  • RF00561 172

External Ids for ENSG00000253065 Gene

Previous GeneCards Identifiers for ENSG00000253065 Gene

  • GC05M167461

Summaries for ENSG00000253065 Gene

GeneCards Summary for ENSG00000253065 Gene

ENSG00000253065 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000253065 Gene

  • Small nucleolar RNA SNORA40

Additional gene information for ENSG00000253065 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000253065 Gene

Genomics for ENSG00000253065 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000253065 Gene

Promoters and enhancers for ENSG00000253065 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J168006 Enhancer 0.3 Ensembl ENCODE 11.1 +26.4 26372 1.5 ENSG00000253065 ENSG00000253947
GH05J168047 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 -14.6 -14596 2.4 CTCF RAD21 NR2F2 SMC3 CEBPB MEF2B POLR2A EBF1 ZNF654 RCOR1 ENSG00000253065 RF00017-5075 lnc-PANK3-16
GH05J168085 Enhancer 1.1 Ensembl ENCODE 0.2 -52.7 -52696 2.6 ZSCAN5C USF1 CTCF ZNF639 ZNF10 ZIC2 KLF7 EP300 ATF2 ZNF341 RF00017-5075 lnc-PANK3-16 ENSG00000253065 ENSG00000253925
GH05J168022 Enhancer 0.6 Ensembl CraniofacialAtlas 0.4 +10.3 10322 1.4 MXI1 RCOR1 SMARCA4 CHD2 GATA2 ENSG00000253660 ENSG00000253065 ENSG00000253947 lnc-PANK3-16
GH05J168041 Enhancer 0.3 CraniofacialAtlas 0.4 -8.9 -8891 0.2 MAFG EZH2 ENSG00000253065 RF00017-5075 lnc-PANK3-16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000253065 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000253065 Gene

Genomic Locations for ENSG00000253065 Gene
chr5:168,033,091-168,033,205
(GRCh38/hg38)
Size:
115 bases
Orientation:
Minus strand
chr5:167,460,096-167,460,210
(GRCh37/hg19)
Size:
115 bases
Orientation:
Minus strand

Genomic View for ENSG00000253065 Gene

Genes around ENSG00000253065 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000253065 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000253065 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000253065 Gene

Proteins for ENSG00000253065 Gene

Post-translational modifications for ENSG00000253065 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000253065 Gene

Domains & Families for ENSG00000253065 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000253065 Gene

Function for ENSG00000253065 Gene

Phenotypes From GWAS Catalog for ENSG00000253065 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000253065 Gene

Localization for ENSG00000253065 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000253065 Gene

Pathways & Interactions for ENSG00000253065 Gene

PathCards logo

SuperPathways for ENSG00000253065 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000253065 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000253065 Gene

Drugs & Compounds for ENSG00000253065 Gene

No Compound Related Data Available

Transcripts for ENSG00000253065 Gene

mRNA/cDNA for ENSG00000253065 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000253065 Gene

No ASD Table

Relevant External Links for ENSG00000253065 Gene

GeneLoc Exon Structure for
ENSG00000253065

Expression for ENSG00000253065 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000253065 Gene

genes like me logo Genes that share expression patterns with ENSG00000253065: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000253065 Gene

Orthologs for ENSG00000253065 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000253065 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA40 31
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA40 31
  • 70 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22434 31
  • 67 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA40 31
  • 67 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA40 31
  • 60 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA40 31
  • 58 (a)
OneToMany
Species where no ortholog for ENSG00000253065 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000253065 Gene

ENSEMBL:
Gene Tree for ENSG00000253065 (if available)
TreeFam:
Gene Tree for ENSG00000253065 (if available)

Paralogs for ENSG00000253065 Gene

No data available for Paralogs for ENSG00000253065 Gene

Variants for ENSG00000253065 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000253065 Gene

Disorders for ENSG00000253065 Gene

No disorders were found for ENSG00000253065 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000253065 Gene

Publications for ENSG00000253065 Gene

No publications were found for ENSG00000253065 Gene.

No data available for Mastermind for ENSG00000253065 Gene

Products for ENSG00000253065 Gene

Sources for ENSG00000253065 Gene