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Aliases for ENSG00000252993 Gene

Subcategory (RNA class) for ENSG00000252993 Gene


Quality Score for this RNA gene is


Aliases for ENSG00000252993 Gene

  • RF00402 5

External Ids for ENSG00000252993 Gene

ORGUL Members for ENSG00000252993 Gene

Previous GeneCards Identifiers for ENSG00000252993 Gene

  • GC10P093835

Summaries for ENSG00000252993 Gene

GeneCards Summary for ENSG00000252993 Gene

ENSG00000252993 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for ENSG00000252993 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA25: ACA25 is a member of the H/ACA class of snoRNA that guide the sites of modification of uridines to pseudouridines [1].

Additional gene information for ENSG00000252993 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000252993 Gene

Genomics for ENSG00000252993 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000252993 Gene

Promoters and enhancers for ENSG00000252993 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J092077 Enhancer 0.6 Ensembl 600.7 +1.1 1059 0.6 PRDM1 CTBP1 GABPA ZBTB11 ZSCAN18 FOXA1 ZNF366 ZBTB40 IKZF1 ENSG00000252993 BTAF1 SDHCP2 CPEB3
GH10J092075 Enhancer 0.2 Ensembl 600.7 -0.2 -241 0.4 ENSG00000252993 BTAF1 CPEB3
GH10J092100 Enhancer 1.2 Ensembl ENCODE 11.4 +26.0 25966 3.6 SP1 CBFA2T2 NKRF MLLT1 ZSCAN21 BACH1 MAFK JUND TRIM24 RELA CPEB3 MARCH5 ENSG00000252993 TNKS2 SDHCP2
GH10J092121 Enhancer 1.2 Ensembl ENCODE 10.6 +48.0 48020 5.1 ZNF652 ELF3 CEBPG RERE TFE3 SP1 HNF1A PPARG ZNF384 ZNF644 ENSG00000252993 BTAF1 HECTD2 GC10M092115 GC10P092119 CPEB3
GH10J092047 Enhancer 1 UCNEbase Ensembl ENCODE 11.6 -27.7 -27739 1.4 ZSCAN4 HDGF CEBPB ENSG00000252993 BTAF1 CPEB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000252993 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000252993 Gene

Genomic Locations for ENSG00000252993 Gene
124 bases
Plus strand
124 bases
Plus strand

Genomic View for ENSG00000252993 Gene

Genes around ENSG00000252993 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000252993 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252993 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000252993 Gene

ORGUL Member Location for ENSG00000252993 gene

No data available for RefSeq DNA sequence for ENSG00000252993 Gene

Proteins for ENSG00000252993 Gene

Post-translational modifications for ENSG00000252993 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252993 Gene

Domains & Families for ENSG00000252993 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000252993 Gene

Function for ENSG00000252993 Gene

Phenotypes From GWAS Catalog for ENSG00000252993 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252993 Gene

Localization for ENSG00000252993 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252993 Gene

Pathways & Interactions for ENSG00000252993 Gene

PathCards logo

SuperPathways for ENSG00000252993 Gene

No Data Available

Interacting Proteins for ENSG00000252993 Gene

Gene Ontology (GO) - Biological Process for ENSG00000252993 Gene


No data available for Pathways by source and SIGNOR curated interactions for ENSG00000252993 Gene

Drugs & Compounds for ENSG00000252993 Gene

No Compound Related Data Available

Transcripts for ENSG00000252993 Gene

mRNA/cDNA for ENSG00000252993 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252993 Gene

No ASD Table

Relevant External Links for ENSG00000252993 Gene

GeneLoc Exon Structure for

Expression for ENSG00000252993 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000252993 Gene

genes like me logo Genes that share expression patterns with ENSG00000252993: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252993 Gene

Orthologs for ENSG00000252993 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252993 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORA25 35
  • 99 (a)
(Mus musculus)
Mammalia Gm23353 35
  • 71 (a)
(Bos Taurus)
Mammalia SNORA25 35
  • 60 (a)
(Canis familiaris)
Mammalia SNORA25 35
  • 58 (a)
(Monodelphis domestica)
Mammalia SNORA25 35
  • 51 (a)
(Gallus gallus)
Aves SNORA25 35
  • 45 (a)
(Anolis carolinensis)
Reptilia SNORA25 35
  • 44 (a)
Species where no ortholog for ENSG00000252993 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000252993 Gene

Gene Tree for ENSG00000252993 (if available)
Gene Tree for ENSG00000252993 (if available)

Paralogs for ENSG00000252993 Gene

No data available for Paralogs for ENSG00000252993 Gene

Variants for ENSG00000252993 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252993 Gene

Disorders for ENSG00000252993 Gene

No disorders were found for ENSG00000252993 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252993 Gene

Publications for ENSG00000252993 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

No data available for External Links for ENSG00000252993 Gene

Products for ENSG00000252993 Gene

Sources for ENSG00000252993 Gene

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