ENSG00000252992 Gene (RNA Gene)

 

GC11P117263
GIFtS:
6
See more...

Aliases for ENSG00000252992 Gene

Subcategory (RNA class) for ENSG00000252992 Gene

scaRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000252992 Gene

  • AP000892.2 5
  • SNODB1591 177
  • RF00564 168

External Ids for ENSG00000252992 Gene

Previous GeneCards Identifiers for ENSG00000252992 Gene

  • GC11P117134

Summaries for ENSG00000252992 Gene

GeneCards Summary for ENSG00000252992 Gene

ENSG00000252992 is an RNA Gene, and is affiliated with the scaRNA class.

Rfam classification for ENSG00000252992 Gene

  • Small Cajal body specific RNA 11

Additional gene information for ENSG00000252992 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000252992 Gene

Genomics for ENSG00000252992 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000252992 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J117314 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 +51.7 51739 3.1 HNRNPL CTCF PRDM10 ZNF692 ZNF7 FOXA1 PRDM1 ZNF143 ZIC2 POLR2A BACE1 CEP164 lnc-PCSK7-2 lnc-RNF214-2 ENSG00000252992 PCSK7 RNF214 ENSG00000250699
GH11J117327 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.6 +64.5 64466 2.3 SP1 CREB1 GATAD2A HNRNPL RFX1 IKZF1 RFX5 POLR2A FOS FOXA1 ENSG00000250699 CEP164 PCSK7 RNF214 ENSG00000252992 BACE1 lnc-BACE1-3 DSCAML1
GH11J117303 Enhancer 0.9 Ensembl ENCODE 11.3 +40.1 40102 1.4 GATAD2A TFE3 RXRB SOX13 CTBP1 USF1 ESRRA PKNOX1 ZNF205 FOXP1 ENSG00000252992 ENSG00000276505 CEP164 BACE1 RNF214
GH11J117312 Promoter/Enhancer 0.8 Ensembl dbSUPER 10.7 +49.6 49602 0.4 CEBPA SPI1 ELF1 ELF3 CEBPG CEBPB CEP164 ENSG00000252992 PCSK7 RNF214 BACE1 ENSG00000276505
GH11J117238 Enhancer 0.6 Ensembl ENCODE 11.9 -24.4 -24419 1.6 CTCF FOS BHLHE40 JUND RAD21 POLR2A BACE1 ENSG00000252992 ENSG00000254851 RNF214 RF00017-1039 CEP164
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000252992 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000252992 Gene

Genomic Locations for ENSG00000252992 Gene
chr11:117,263,799-117,263,952
(GRCh38/hg38)
Size:
154 bases
Orientation:
Plus strand
chr11:117,134,515-117,134,668
(GRCh37/hg19)
Size:
154 bases
Orientation:
Plus strand

Genomic View for ENSG00000252992 Gene

Genes around ENSG00000252992 on UCSC Golden Path with GeneCards custom track
ENSG00000252992 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000252992 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252992 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000252992 Gene

Proteins for ENSG00000252992 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000252992 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252992 Gene

Domains & Families for ENSG00000252992 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000252992 Gene

Function for ENSG00000252992 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000252992 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252992 Gene

Localization for ENSG00000252992 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252992 Gene

Pathways & Interactions for ENSG00000252992 Gene

PathCards logo

SuperPathways for ENSG00000252992 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000252992 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000252992 Gene

Drugs & Compounds for ENSG00000252992 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000252992 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000252992 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006C4A64_9606 snoRNA 154 3

Ensembl: ENST00000517183 (view in UCSC) ,

Rfam: RF00564,

snoDB: SNODB1591,

ENSG00000252992 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252992 Gene

No ASD Table

Relevant External Links for ENSG00000252992 Gene

GeneLoc Exon Structure for
ENSG00000252992

No data available for mRNA/cDNA for ENSG00000252992 Gene

Expression for ENSG00000252992 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000252992 Gene

mRNA expression in normal human tissues for ENSG00000252992 Gene
mRNA expression by GTEx for ENSG00000252992 Gene
genes like me logo Genes that share expression patterns with ENSG00000252992: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252992 Gene

Orthologs for ENSG00000252992 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252992 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SCARNA11 31
  • 97 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SCARNA11 31 31
  • 77 (a)
 OneToMany
Platypus
(Ornithorhynchus anatinus)
 Mammalia SCARNA11 31
  • 59 (a)
 OneToMany
Chicken
(Gallus gallus)
 Aves SCARNA11 31
  • 52 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SCARNA11 31
  • 53 (a)
 OneToMany
Zebrafish
(Danio rerio)
 Actinopterygii SCARNA11 31
  • 56 (a)
 OneToMany
Species where no ortholog for ENSG00000252992 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for ENSG00000252992 Gene

ENSEMBL:
Gene Tree for ENSG00000252992 (if available)
TreeFam:
Gene Tree for ENSG00000252992 (if available)

Paralogs for ENSG00000252992 Gene

No data available for Paralogs for ENSG00000252992 Gene

Variants for ENSG00000252992 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252992 Gene

Disorders for ENSG00000252992 Gene

No disorders were found for ENSG00000252992 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252992 Gene

Publications for ENSG00000252992 Gene

No publications were found for ENSG00000252992 Gene.

No data available for Mastermind for ENSG00000252992 Gene

Products for ENSG00000252992 Gene

Sources for ENSG00000252992 Gene