ENSG00000252870 Gene (RNA Gene)

 

GC11M115128
GIFtS:
5
See more...

Aliases for ENSG00000252870 Gene

Subcategory (RNA class) for ENSG00000252870 Gene

snoRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000252870 Gene

  • AP003179.1 5
  • SNODB1580 177

External Ids for ENSG00000252870 Gene

Previous GeneCards Identifiers for ENSG00000252870 Gene

  • GC11M114998

Summaries for ENSG00000252870 Gene

GeneCards Summary for ENSG00000252870 Gene

ENSG00000252870 is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for ENSG00000252870 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000252870 Gene

Genomics for ENSG00000252870 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000252870 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J115164 Enhancer 0.8 Ensembl ENCODE 11.9 -38.2 -38215 8 CTCF FOXA1 ZNF143 ZIC2 RAD21 CEBPB FOXA2 OSR2 RBM22 WT1 CADM1 ENSG00000252870 lnc-NXPE2-1 HSALNG0087336 lnc-CADM1-5 NXPE4
GH11J115097 Enhancer 0.3 UCNEbase 11.7 +30.5 30473 0.2 ENSG00000252870 LOC105369506 CADM1 NXPE4
GH11J115112 Enhancer 0.6 Ensembl CraniofacialAtlas 0.4 +15.4 15372 0.8 POLR2A RAD21 SMARCA4 ENSG00000252870 LOC105369506 CADM1 NXPE4
GH11J115139 Enhancer 0.4 FANTOM5 Ensembl 0.4 -11.5 -11538 0.6 HSALNG0087334 CADM1 ENSG00000252870 NXPE4
GH11J115125 Enhancer 0.2 Ensembl 0.7 +4.1 4072 0.2 ENSG00000252870 LOC105369506 CADM1 NXPE4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000252870 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000252870 Gene

Genomic Locations for ENSG00000252870 Gene
chr11:115,128,218-115,128,373
(GRCh38/hg38)
Size:
156 bases
Orientation:
Minus strand
chr11:114,998,938-114,999,093
(GRCh37/hg19)
Size:
156 bases
Orientation:
Minus strand

Genomic View for ENSG00000252870 Gene

Genes around ENSG00000252870 on UCSC Golden Path with GeneCards custom track
ENSG00000252870 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000252870 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252870 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000252870 Gene

Proteins for ENSG00000252870 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000252870 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252870 Gene

Domains & Families for ENSG00000252870 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000252870 Gene

Function for ENSG00000252870 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000252870 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252870 Gene

Localization for ENSG00000252870 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252870 Gene

Pathways & Interactions for ENSG00000252870 Gene

PathCards logo

SuperPathways for ENSG00000252870 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000252870 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000252870 Gene

Drugs & Compounds for ENSG00000252870 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000252870 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000252870 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A9C8EF_9606 snoRNA 156 2

Ensembl: ENST00000517061 (view in UCSC) ,

snoDB: SNODB1580,

ENSG00000252870 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252870 Gene

No ASD Table

Relevant External Links for ENSG00000252870 Gene

GeneLoc Exon Structure for
ENSG00000252870

No data available for mRNA/cDNA for ENSG00000252870 Gene

Expression for ENSG00000252870 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000252870 Gene

mRNA expression in normal human tissues for ENSG00000252870 Gene
mRNA expression by GTEx for ENSG00000252870 Gene
genes like me logo Genes that share expression patterns with ENSG00000252870: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252870 Gene

Orthologs for ENSG00000252870 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000252870 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia ACA59 31
  • 99 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia ACA59 31
  • 55 (a)
 OneToMany
Oppossum
(Monodelphis domestica)
 Mammalia ACA59 31
  • 55 (a)
 ManyToMany
Species where no ortholog for ENSG00000252870 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000252870 Gene

ENSEMBL:
Gene Tree for ENSG00000252870 (if available)
TreeFam:
Gene Tree for ENSG00000252870 (if available)

Paralogs for ENSG00000252870 Gene

No data available for Paralogs for ENSG00000252870 Gene

Variants for ENSG00000252870 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252870 Gene

Disorders for ENSG00000252870 Gene

No disorders were found for ENSG00000252870 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252870 Gene

Publications for ENSG00000252870 Gene

No publications were found for ENSG00000252870 Gene.

No data available for Mastermind for ENSG00000252870 Gene

Products for ENSG00000252870 Gene

Sources for ENSG00000252870 Gene