Aliases for ENSG00000252778 Gene

Subcategory (RNA class) for ENSG00000252778 Gene

scaRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000252778 Gene

  • AP006442.1 5
  • RF00601 172

External Ids for ENSG00000252778 Gene

Summaries for ENSG00000252778 Gene

GeneCards Summary for ENSG00000252778 Gene

ENSG00000252778 is an RNA Gene, and is affiliated with the scaRNA class.

Rfam classification for ENSG00000252778 Gene

  • Small Cajal body specific RNA 20

Additional gene information for ENSG00000252778 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000252778 Gene

Genomics for ENSG00000252778 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000252778 Gene

Promoters and enhancers for ENSG00000252778 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J008227 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -326.6 -326615 3.6 ZNF10 ZIC2 ZBTB10 ZNF423 EP300 ATF2 OSR2 WT1 ZBTB17 ZNF263 LOC105376536 HSALNG0082542 ENSG00000252778 STK33 TRIM66 HSALNG0082540 LMO1
GH11J008327 Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas 10.4 -226.4 -226399 1.7 CTCF TCF12 JUND FOS ZIC2 GABPA TRIM28 RELA CTBP1 TRIM22 HSALNG0082552 ENSG00000252778 TRIM66 LMO1
GH11J008531 Enhancer 0.9 Ensembl ENCODE 11.8 -23.1 -23055 1.5 ZBTB40 EP300 RELA MXI1 MEF2B POLR2A USF1 IRF4 IKZF1 RCOR1 STK33 ENSG00000252778 TMEM9B-AS1 RF00017-853 piR-54764-072 lnc-TRIM66-5 lnc-TRIM66-6
GH11J008532 Enhancer 0.9 Ensembl ENCODE 11.8 -21.6 -21615 1.2 ZBTB40 RELA RAD21 TRIM22 CTCF ARNT MEF2B NBN NFE2 ELF1 STK33 ENSG00000252778 RF00017-853 piR-54764-072 lnc-TRIM66-5 lnc-TRIM66-6
GH11J008340 Enhancer 0.9 Ensembl ENCODE 10.8 -213.2 -213215 4.4 CTCF RELA RBM25 TCF12 NBN SPI1 MYC PKNOX1 EBF1 IKZF1 ENSG00000252778 TRIM66 TMEM9B-AS1 HSALNG0082550 piR-61289-012
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000252778 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000252778 Gene

Genomic Locations for ENSG00000252778 Gene
chr11:8,555,016-8,555,146
(GRCh38/hg38)
Size:
131 bases
Orientation:
Plus strand
chr11:8,576,563-8,576,693
(GRCh37/hg19)
Size:
131 bases
Orientation:
Plus strand

Genomic View for ENSG00000252778 Gene

Genes around ENSG00000252778 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000252778 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252778 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000252778 Gene

Proteins for ENSG00000252778 Gene

Post-translational modifications for ENSG00000252778 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252778 Gene

Domains & Families for ENSG00000252778 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000252778 Gene

Function for ENSG00000252778 Gene

Phenotypes From GWAS Catalog for ENSG00000252778 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252778 Gene

Localization for ENSG00000252778 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252778 Gene

Pathways & Interactions for ENSG00000252778 Gene

PathCards logo

SuperPathways for ENSG00000252778 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000252778 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000252778 Gene

Drugs & Compounds for ENSG00000252778 Gene

No Compound Related Data Available

Transcripts for ENSG00000252778 Gene

mRNA/cDNA for ENSG00000252778 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252778 Gene

No ASD Table

Relevant External Links for ENSG00000252778 Gene

GeneLoc Exon Structure for
ENSG00000252778

Expression for ENSG00000252778 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000252778 Gene

genes like me logo Genes that share expression patterns with ENSG00000252778: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252778 Gene

Orthologs for ENSG00000252778 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252778 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA20 31
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA20 31
  • 76 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SCARNA20 31 31
  • 74 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm25492 31
  • 72 (a)
OneToMany
Gm24682 31
  • 60 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SCARNA20 31
  • 60 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA20 31
  • 51 (a)
OneToMany
chicken
(Gallus gallus)
Aves SCARNA20 31
  • 54 (a)
OneToMany
Species where no ortholog for ENSG00000252778 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000252778 Gene

ENSEMBL:
Gene Tree for ENSG00000252778 (if available)
TreeFam:
Gene Tree for ENSG00000252778 (if available)

Paralogs for ENSG00000252778 Gene

No data available for Paralogs for ENSG00000252778 Gene

Variants for ENSG00000252778 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252778 Gene

Disorders for ENSG00000252778 Gene

No disorders were found for ENSG00000252778 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252778 Gene

Publications for ENSG00000252778 Gene

No publications were found for ENSG00000252778 Gene.

No data available for Mastermind for ENSG00000252778 Gene

Products for ENSG00000252778 Gene

Sources for ENSG00000252778 Gene