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Aliases for ENSG00000252777 Gene

Subcategory (RNA class) for ENSG00000252777 Gene


Aliases for ENSG00000252777 Gene

  • RF00422 5

External Ids for ENSG00000252777 Gene

ORGUL Members for ENSG00000252777 Gene

Previous GeneCards Identifiers for ENSG00000252777 Gene

  • GC01P029017

Summaries for ENSG00000252777 Gene

GeneCards Summary for ENSG00000252777 Gene

ENSG00000252777 is an Uncategorized gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for ENSG00000252777 Gene - the ORGUL cluster for this gene includes several descriptions:

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

  • Small Cajal body specific RNA 24: scaRNAs are a specific class of small nuclear RNAs which localise to the Cajal bodies and guide the modification of RNA polymerase II transcribed spliceosomal RNAs U1, U2, U4, U5 and U12 [1]. ACA12 belongs to the H/ACA box class of guide RNAs as it has the predicted hairpin-hinge-hairpin-tail structure,the conserved H/ACA-box motifs and is found associated with GAR1 [2]. ACA12 is predicted to guide the pseudouridylation of residue U40 of the spliceosomal U6 snRNA [2].

View fRNAdb secondary structures for ENSG00000252777

Additional gene information for ENSG00000252777 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000252777 Gene

Genomics for ENSG00000252777 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000252777 Gene

Promoters and enhancers for ENSG00000252777 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J028718 Enhancer 1 Ensembl ENCODE 12.3 +29.3 29301 0.5 HDAC1 HDGF E2F8 ATF7 REST ZNF592 SMARCA4 ZNF184 GMEB1 IKZF1 ENSG00000252777 GMEB1 OPRD1 GC01P028719 YTHDF2
GH01J028748 Enhancer 0.8 Ensembl 11.5 +59.4 59436 1.4 HDGF ARNT NFRKB MZF1 FEZF1 E2F8 SCRT2 ATF7 ZNF362 CEBPB ENSG00000252777 GMEB1 OPRD1 ENSG00000233427 TRNAU1AP PHACTR4 YTHDF2 GC01P028737 GC01M028770
GH01J028751 Enhancer 0.7 Ensembl 11.4 +61.8 61804 0.5 HDAC1 MEIS2 TAL1 JUN FOSL1 TCF12 CTBP1 FOXK2 NCOR1 ADNP GMEB1 SRSF4 TRNAU1AP ENSG00000252777 OPRD1 ENSG00000233427 SNHG12 YTHDF2 PPP1R8 GC01P028737
GH01J028750 Enhancer 0.3 Ensembl 11.4 +61.2 61236 0.2 ZNF362 ENSG00000252777 OPRD1 GMEB1 ENSG00000233427 GC01P028737 YTHDF2 GC01M028770
GH01J028720 Enhancer 0.2 ENCODE 12.3 +31.5 31526 1.3 ENSG00000252777 GMEB1 PHACTR4 OPRD1 GC01P028719 YTHDF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000252777 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000252777 Gene

Genomic Locations for ENSG00000252777 Gene
130 bases
Plus strand

Genomic View for ENSG00000252777 Gene

Genes around ENSG00000252777 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000252777 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252777 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000252777 Gene

ORGUL Member Location for ENSG00000252777 gene

No data available for RefSeq DNA sequence for ENSG00000252777 Gene

Proteins for ENSG00000252777 Gene

Post-translational modifications for ENSG00000252777 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252777 Gene

Domains & Families for ENSG00000252777 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000252777 Gene

Function for ENSG00000252777 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252777 Gene

Localization for ENSG00000252777 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252777 Gene

Pathways & Interactions for ENSG00000252777 Gene

SuperPathways for ENSG00000252777 Gene

No Data Available

Interacting Proteins for ENSG00000252777 Gene

Gene Ontology (GO) - Biological Process for ENSG00000252777 Gene


No data available for Pathways by source and SIGNOR curated interactions for ENSG00000252777 Gene

Drugs & Compounds for ENSG00000252777 Gene

No Compound Related Data Available

Transcripts for ENSG00000252777 Gene

fRNAdb Secondary structures for ENSG00000252777 Gene

  • RF00422;SCARNA24;DAAB014053763.1/27-106

mRNA/cDNA for ENSG00000252777 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252777 Gene

No ASD Table

Relevant External Links for ENSG00000252777 Gene

GeneLoc Exon Structure for

Expression for ENSG00000252777 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000252777 Gene

genes like me logo Genes that share expression patterns with ENSG00000252777: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252777 Gene

Orthologs for ENSG00000252777 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252777 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SCARNA24 34
  • 96 (a)
(Monodelphis domestica)
Mammalia SCARNA24 34
  • 70 (a)
(Gallus gallus)
Aves SCARNA24 34
  • 65 (a)
(Danio rerio)
Actinopterygii SCARNA24 34
  • 47 (a)
Species where no ortholog for ENSG00000252777 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000252777 Gene

Gene Tree for ENSG00000252777 (if available)
Gene Tree for ENSG00000252777 (if available)

Paralogs for ENSG00000252777 Gene

No data available for Paralogs for ENSG00000252777 Gene

Variants for ENSG00000252777 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252777 Gene

Disorders for ENSG00000252777 Gene

No disorders were found for ENSG00000252777 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252777 Gene

Publications for ENSG00000252777 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  3. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. (PMID: 12032087) Darzacq X … Kiss T (The EMBO journal 2002) 1

Products for ENSG00000252777 Gene

Sources for ENSG00000252777 Gene

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