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Aliases for ENSG00000252727 Gene

Subcategory (RNA class) for ENSG00000252727 Gene

scaRNA

Aliases for ENSG00000252727 Gene

  • Small Cajal Body Specific RNA 11 5
  • SCARNA11 5

External Ids for ENSG00000252727 Gene

ORGUL Members for ENSG00000252727 Gene

Previous GeneCards Identifiers for ENSG00000252727 Gene

  • GC12P008751

Summaries for ENSG00000252727 Gene

GeneCards Summary for ENSG00000252727 Gene

ENSG00000252727 is an Uncategorized gene, and is affiliated with the scaRNA class.

Additional gene information for ENSG00000252727 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000252727 Gene

Genomics for ENSG00000252727 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000252727 Gene

Promoters and enhancers for ENSG00000252727 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I008562 Enhancer 0.4 ENCODE 11.8 -35.0 -35019 0.1 CTCF ZNF143 ENSG00000252727 RNU6-275P LOC105369645 ENSG00000255801 CLEC4E
GH12I008560 Enhancer 0.2 ENCODE 11.8 -36.3 -36281 1 ENSG00000252727 RNU6-275P ENSG00000255801 LOC105369645 CLEC4E
GH12I008610 Enhancer 1.1 FANTOM5 ENCODE 0.4 +13.7 13748 1.3 HDGF PKNOX1 ZSCAN4 BMI1 BATF IRF4 TCF12 ZNF766 ATF7 ETV6 AICDA CLEC4E ENSG00000252727
GH12I008609 Enhancer 0.9 Ensembl ENCODE 0.4 +11.9 11892 0.8 CTCF BMI1 RAD21 POLR2A SCRT2 SMC3 ZNF143 BCLAF1 IKZF2 MIXL1 CLEC4E A2ML1-AS2 A2ML1 KLRB1 AICDA ENSG00000252727
GH12I008612 Promoter 0.9 EPDnew 0.4 +15.4 15370 0.1 PKNOX1 SMAD5 EBF1 BATF POLR2A BCL11A NBN MLLT1 BCLAF1 AICDA CLEC4E ENSG00000252727
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000252727 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000252727 Gene

Genomic Locations for ENSG00000252727 Gene
chr12:8,597,509-8,597,640
(GRCh38/hg38)
Size:
132 bases
Orientation:
Plus strand
chr12:8,750,105-8,750,236
(GRCh37/hg19)

Genomic View for ENSG00000252727 Gene

Genes around ENSG00000252727 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000252727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252727 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000252727 Gene

Proteins for ENSG00000252727 Gene

Post-translational modifications for ENSG00000252727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252727 Gene

Domains & Families for ENSG00000252727 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000252727 Gene

Function for ENSG00000252727 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252727 Gene

Localization for ENSG00000252727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252727 Gene

Pathways & Interactions for ENSG00000252727 Gene

SuperPathways for ENSG00000252727 Gene

No Data Available

Interacting Proteins for ENSG00000252727 Gene

Gene Ontology (GO) - Biological Process for ENSG00000252727 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000252727 Gene

Drugs & Compounds for ENSG00000252727 Gene

No Compound Related Data Available

Transcripts for ENSG00000252727 Gene

mRNA/cDNA for ENSG00000252727 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252727 Gene

No ASD Table

Relevant External Links for ENSG00000252727 Gene

GeneLoc Exon Structure for
ENSG00000252727

Expression for ENSG00000252727 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000252727 Gene

genes like me logo Genes that share expression patterns with ENSG00000252727: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252727 Gene

Orthologs for ENSG00000252727 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252727 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA11 34
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA11 34
  • 80 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23751 34
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA11 34
  • 77 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA11 34
  • 60 (a)
OneToMany
chicken
(Gallus gallus)
Aves SCARNA11 34
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SCARNA11 34
  • 51 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SCARNA11 34
  • 57 (a)
OneToMany
Species where no ortholog for ENSG00000252727 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000252727 Gene

ENSEMBL:
Gene Tree for ENSG00000252727 (if available)
TreeFam:
Gene Tree for ENSG00000252727 (if available)

Paralogs for ENSG00000252727 Gene

No data available for Paralogs for ENSG00000252727 Gene

Variants for ENSG00000252727 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252727 Gene

Disorders for ENSG00000252727 Gene

No disorders were found for ENSG00000252727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252727 Gene

Publications for ENSG00000252727 Gene

No publications were found for ENSG00000252727 Gene.

Products for ENSG00000252727 Gene

Sources for ENSG00000252727 Gene

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