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ENSG00000252258 Gene(RNA Gene)

 

GCID:
GC18M003043
GIFtS:
8
Genes Participants
UDN Logo

Aliases for ENSG00000252258 Gene

Subcategory (RNA class) for ENSG00000252258 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000252258 Gene

  • RF00156 5

External Ids for ENSG00000252258 Gene

ORGUL Members for ENSG00000252258 Gene

Previous GeneCards Identifiers for ENSG00000252258 Gene

  • GC18M003026
  • GC18M003027
  • GC18M003029
  • GC18M003031
  • GC18M003033
  • GC18M003035
  • GC18M003037
  • GC18M003039
  • GC18M003041

Summaries for ENSG00000252258 Gene

GeneCards Summary for ENSG00000252258 Gene

ENSG00000252258 is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for ENSG00000252258 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000252258 Gene

Genomics for ENSG00000252258 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for ENSG00000252258 Gene

Promoters and enhancers for ENSG00000252258 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J002975 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.8 +44.0 44019 12 PKNOX1 FOXA2 SMAD1 MLX ARID4B IRF4 YY1 SLC30A9 FOS SP5 LPIN2 EMILIN2 ENSG00000252258 MYOM1 SMCHD1 TGIF1 MYL12B SNRPCP4 LOC105371963
GH18J003056 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.6 -34.7 -34659 6.9 PKNOX1 FOXA2 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 ZNF143 FOS LPIN2 ENSG00000252258 MYOM1 EMILIN2 MYL12B SMCHD1 METTL4 GC18P003050 RNU7-25P GC18P003018
GH18J003050 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.6 -26.5 -26543 3.6 FOXA2 MLX ARID4B DMAP1 ETS1 YY1 TCF12 ZNF280A SLC30A9 ATF7 GC18P003050 GC18P003051 LPIN2 ENSG00000252258 MYOM1 GC18P003018 RNU7-25P
GH18J002965 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11 +56.0 55961 8.1 HDGF PKNOX1 FOXA2 SMAD1 YY1 EGR1 ATF7 BCLAF1 IKZF2 RUNX3 LPIN2 ENSG00000252258 EMILIN2 DLGAP1-AS1 TGIF1 SMCHD1 MYL12B LOC105371963 SNRPCP4
GH18J002955 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +66.0 65956 8.7 HDGF PKNOX1 FOXA2 RAD21 YY1 EGR1 ATF7 RCOR1 IKZF2 RUNX3 LPIN2 ENSG00000252258 EMILIN2 SMCHD1 METTL4 TGIF1 MYL12B LOC105371963 ENSG00000265907
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ENSG00000252258 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000252258 Gene

Genomic Locations for ENSG00000252258 Gene
chr18:3,025,434-3,025,566
(GRCh38/hg38)
Size:
133 bases
Orientation:
Minus strand
chr18:3,025,432-3,025,564
(GRCh37/hg19)
Size:
133 bases
Orientation:
Minus strand

Genomic View for ENSG00000252258 Gene

Genes around ENSG00000252258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000252258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252258 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000252258 Gene

Proteins for ENSG00000252258 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000252258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252258 Gene

Domains & Families for ENSG00000252258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000252258 Gene

Function for ENSG00000252258 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000252258 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252258 Gene

Localization for ENSG00000252258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252258 Gene

Pathways & Interactions for ENSG00000252258 Gene

SuperPathways for ENSG00000252258 Gene

PathCards logo More details on SuperPathways for ENSG00000252258
No Data Available

Interacting Proteins for ENSG00000252258 Gene

Gene Ontology (GO) - Biological Process for ENSG00000252258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000252258 Gene

Drugs & Compounds for ENSG00000252258 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000252258 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ENSG00000252258 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252258 Gene

No ASD Table

Relevant External Links for ENSG00000252258 Gene

GeneLoc Exon Structure for
ENSG00000252258

Expression for ENSG00000252258 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000252258 Gene

mRNA expression in normal human tissues for ENSG00000252258 Gene
mRNA expression by GTEx for ENSG00000252258 Gene
genes like me logo Genes that share expression patterns with ENSG00000252258: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252258 Gene

Orthologs for ENSG00000252258 Gene

This gene was present in the common ancestor of mammals.

Orthologs for ENSG00000252258 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORA70 34
  • 93 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORA70 34
  • 73 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Gm22327 34
  • 72 (a)
 ManyToMany
dog
(Canis familiaris)
 Mammalia SNORA70 34
  • 69 (a)
 ManyToMany
Species where no ortholog for ENSG00000252258 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000252258 Gene

ENSEMBL:
Gene Tree for ENSG00000252258 (if available)
TreeFam:
Gene Tree for ENSG00000252258 (if available)

Paralogs for ENSG00000252258 Gene

No data available for Paralogs for ENSG00000252258 Gene

Variants for ENSG00000252258 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252258 Gene

Disorders for ENSG00000252258 Gene

No disorders were found for ENSG00000252258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252258 Gene

Publications for ENSG00000252258 Gene

No publications were found for ENSG00000252258 Gene.

Products for ENSG00000252258 Gene

Sources for ENSG00000252258 Gene

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