Aliases for ENSG00000252139 Gene

Subcategory (RNA class) for ENSG00000252139 Gene

scaRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000252139 Gene

  • AC090227.1 5
  • SNODB231 177
  • RF00283 168

External Ids for ENSG00000252139 Gene

Previous GeneCards Identifiers for ENSG00000252139 Gene

  • GC18P047343
  • GC18P047346
  • GC18P047348
  • GC18P047353
  • GC18P049815
  • GC18P049817
  • GC18P049826
  • GC18P049827
  • GC18P049825
  • GC18P049830
  • GC18P049818
  • GC18P049819
  • GC18P049820
  • GC18P049821
  • GC18P049822
  • GC18P049823
  • GC18P049824

Summaries for ENSG00000252139 Gene

GeneCards Summary for ENSG00000252139 Gene

ENSG00000252139 is an RNA Gene, and is affiliated with the scaRNA class.

Rfam classification for ENSG00000252139 Gene

  • small Cajal body-specific RNA 18

Additional gene information for ENSG00000252139 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000252139 Gene

Genomics for ENSG00000252139 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000252139 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000252139 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000252139 Gene

Genomic Locations for ENSG00000252139 Gene
chr18:49,814,361-49,814,443
(GRCh38/hg38)
Size:
83 bases
Orientation:
Plus strand
chr18:47,340,731-47,340,813
(GRCh37/hg19)
Size:
83 bases
Orientation:
Plus strand

Genomic View for ENSG00000252139 Gene

Genes around ENSG00000252139 on UCSC Golden Path with GeneCards custom track
ENSG00000252139 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000252139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000252139 Gene

Proteins for ENSG00000252139 Gene

Post-translational modifications for ENSG00000252139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252139 Gene

Domains & Families for ENSG00000252139 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000252139 Gene

Function for ENSG00000252139 Gene

Phenotypes From GWAS Catalog for ENSG00000252139 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252139 Gene

Localization for ENSG00000252139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252139 Gene

Pathways & Interactions for ENSG00000252139 Gene

PathCards logo

SuperPathways for ENSG00000252139 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000252139 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000252139 Gene

Drugs & Compounds for ENSG00000252139 Gene

No Compound Related Data Available

Transcripts for ENSG00000252139 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000252139 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005B2B49_9606 snoRNA 83 4

Ensembl: ENST00000516330 (view in UCSC) ,

Rfam: RF00283,

snoDB: SNODB231,

ENA: AY077741.1:1..83:ncRNA,

ENSG00000252139 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252139 Gene

No ASD Table

Relevant External Links for ENSG00000252139 Gene

GeneLoc Exon Structure for
ENSG00000252139

No data available for mRNA/cDNA for ENSG00000252139 Gene

Expression for ENSG00000252139 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000252139 Gene

genes like me logo Genes that share expression patterns with ENSG00000252139: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252139 Gene

Orthologs for ENSG00000252139 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252139 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SCARNA18 31
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Scarna17 31
  • 91 (a)
OneToMany
Gm25443 31
  • 87 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia SCARNA18 31 31 31
  • 90 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SCARNA18 31 31 31
  • 86 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia SCARNA18 31
  • 84 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia SCARNA18 31
  • 67 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SCARNA18 31
  • 61 (a)
OneToMany
Species where no ortholog for ENSG00000252139 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for ENSG00000252139 Gene

ENSEMBL:
Gene Tree for ENSG00000252139 (if available)
TreeFam:
Gene Tree for ENSG00000252139 (if available)

Paralogs for ENSG00000252139 Gene

No data available for Paralogs for ENSG00000252139 Gene

Variants for ENSG00000252139 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252139 Gene

Disorders for ENSG00000252139 Gene

No disorders were found for ENSG00000252139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252139 Gene

Publications for ENSG00000252139 Gene

No publications were found for ENSG00000252139 Gene.

No data available for Mastermind for ENSG00000252139 Gene

Products for ENSG00000252139 Gene

Sources for ENSG00000252139 Gene