ENSG00000252138 Gene (RNA Gene)

 

GC16M007726
GIFtS:
6
See more...

Aliases for ENSG00000252138 Gene

Subcategory (RNA class) for ENSG00000252138 Gene

snoRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000252138 Gene

  • AC005774.1 5
  • SNODB1144 177
  • RF00561 168

External Ids for ENSG00000252138 Gene

Previous GeneCards Identifiers for ENSG00000252138 Gene

  • GC16M007777

Summaries for ENSG00000252138 Gene

GeneCards Summary for ENSG00000252138 Gene

ENSG00000252138 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000252138 Gene

  • Small nucleolar RNA SNORA40

Additional gene information for ENSG00000252138 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000252138 Gene

Genomics for ENSG00000252138 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000252138 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J007764 Enhancer 0.6 Ensembl ENCODE 11.5 -38.1 -38085 1.5 FOSL1 NANOG POLR2A POU5F1 MAFK JUND piR-48348-018 ENSG00000252138 METTL22 HSALNG0109355 TMEM114
GH16J007689 Enhancer 0.3 Ensembl 12.3 +37.6 37550 0.4 RAD21 CTCF ENSG00000252138 ENSG00000261198 TMEM114
GH16J007761 Enhancer 0.3 Ensembl 12 -35.4 -35350 1.4 FOSL1 piR-48348-018 ENSG00000252138 METTL22 piR-39858-226 TMEM114
GH16J007677 Enhancer 0.2 Ensembl 11.2 +49.7 49650 1 ENSG00000252138 ENSG00000261198 TMEM114
GH16J007779 Enhancer 0.2 Ensembl 11.1 -52.6 -52550 0.6 ENSG00000252138 HSALNG0109355 piR-48325-053 TMEM114
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000252138 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000252138 Gene

Genomic Locations for ENSG00000252138 Gene
chr16:7,726,841-7,726,951
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand
chr16:7,776,843-7,776,953
(GRCh37/hg19)
Size:
111 bases
Orientation:
Minus strand

Genomic View for ENSG00000252138 Gene

Genes around ENSG00000252138 on UCSC Golden Path with GeneCards custom track
ENSG00000252138 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000252138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252138 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000252138 Gene

Proteins for ENSG00000252138 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000252138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252138 Gene

Domains & Families for ENSG00000252138 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000252138 Gene

Function for ENSG00000252138 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000252138 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252138 Gene

Localization for ENSG00000252138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000252138 Gene

Pathways & Interactions for ENSG00000252138 Gene

PathCards logo

SuperPathways for ENSG00000252138 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000252138 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000252138 Gene

Drugs & Compounds for ENSG00000252138 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000252138 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000252138 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000070A47A_9606 snoRNA 111 3

Ensembl: ENST00000516329 (view in UCSC) ,

Rfam: RF00561,

snoDB: SNODB1144,

ENSG00000252138 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252138 Gene

No ASD Table

Relevant External Links for ENSG00000252138 Gene

GeneLoc Exon Structure for
ENSG00000252138

No data available for mRNA/cDNA for ENSG00000252138 Gene

Expression for ENSG00000252138 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000252138 Gene

mRNA expression in normal human tissues for ENSG00000252138 Gene
mRNA expression by GTEx for ENSG00000252138 Gene
genes like me logo Genes that share expression patterns with ENSG00000252138: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252138 Gene

Orthologs for ENSG00000252138 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252138 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORA40 31
  • 91 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORA40 31
  • 72 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORA40 31
  • 61 (a)
 OneToMany
Mouse
(Mus musculus)
 Mammalia Gm22382 31
  • 60 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORA40 31
  • 57 (a)
 OneToMany
Chicken
(Gallus gallus)
 Aves SNORA40 31
  • 51 (a)
 OneToMany
Species where no ortholog for ENSG00000252138 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000252138 Gene

ENSEMBL:
Gene Tree for ENSG00000252138 (if available)
TreeFam:
Gene Tree for ENSG00000252138 (if available)

Paralogs for ENSG00000252138 Gene

No data available for Paralogs for ENSG00000252138 Gene

Variants for ENSG00000252138 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000252138 Gene

Disorders for ENSG00000252138 Gene

No disorders were found for ENSG00000252138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252138 Gene

Publications for ENSG00000252138 Gene

No publications were found for ENSG00000252138 Gene.

No data available for Mastermind for ENSG00000252138 Gene

Products for ENSG00000252138 Gene

Sources for ENSG00000252138 Gene