Aliases for ENSG00000251818 Gene

Subcategory (RNA class) for ENSG00000251818 Gene

scaRNA

Quality Score for this RNA gene is

12

Aliases for ENSG00000251818 Gene

External Ids for ENSG00000251818 Gene

Previous GeneCards Identifiers for ENSG00000251818 Gene

  • GC17P026346

Summaries for ENSG00000251818 Gene

GeneCards Summary for ENSG00000251818 Gene

ENSG00000251818 is an RNA Gene, and is affiliated with the scaRNA class.

Rfam classification for ENSG00000251818 Gene

  • Small Cajal body specific RNA 20

Additional gene information for ENSG00000251818 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000251818 Gene

Genomics for ENSG00000251818 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000251818 Gene

Promoters and enhancers for ENSG00000251818 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J028018 Enhancer 0.5 ENCODE 750.6 +0.1 120 0.2 IKZF1 REST EHMT2 NFIB NFIC ENSG00000251818 ENSG00000266190
GH17J028019 Enhancer 0.4 Ensembl 750.6 +0.3 331 0.2 IKZF1 REST EHMT2 NFIB ENSG00000251818 ENSG00000266190
GH17J028040 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.5 +24.0 24031 4.8 ZNF24 SP1 ZBTB40 POLR2A CEBPZ ATF1 FOS CREB1 ZNF362 NFYC NLK LOC105371709 LOC102724517 SUPT6H PHF12 ITM2BP1 SDF2 SEZ6 TMEM199 LOC101927018
GH17J027984 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.1 -32.6 -32568 3.4 ZBTB40 SMARCE1 CC2D1A L3MBTL2 DACH1 TEAD4 ZKSCAN8 GTF2F1 MLLT1 CBFA2T2 LYRM9 NLK ENSG00000251818 ENSG00000202389 SUPT6H KIAA0100 PIGS LINC01992 piR-43105-268
GH17J027974 Enhancer 1 Ensembl ENCODE dbSUPER 11.3 -43.6 -43589 1.3 SMARCE1 L3MBTL2 ZFX SMARCA4 PRDM1 ZNF316 JUND NFE2 SCRT2 MGA ENSG00000251818 ENSG00000202389 LYRM9 LINC01992 piR-43105-268
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000251818 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000251818 Gene

Genomic Locations for ENSG00000251818 Gene
chr17:28,018,770-28,018,907
(GRCh38/hg38)
Size:
138 bases
Orientation:
Plus strand
chr17:26,345,796-26,345,933
(GRCh37/hg19)
Size:
138 bases
Orientation:
Plus strand

Genomic View for ENSG00000251818 Gene

Genes around ENSG00000251818 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000251818 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000251818 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000251818 Gene

Proteins for ENSG00000251818 Gene

Post-translational modifications for ENSG00000251818 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000251818 Gene

Domains & Families for ENSG00000251818 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000251818 Gene

Function for ENSG00000251818 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000251818 Gene

Localization for ENSG00000251818 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000251818 Gene

Pathways & Interactions for ENSG00000251818 Gene

PathCards logo

SuperPathways for ENSG00000251818 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000251818 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000251818 Gene

Drugs & Compounds for ENSG00000251818 Gene

No Compound Related Data Available

Transcripts for ENSG00000251818 Gene

mRNA/cDNA for ENSG00000251818 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000251818 Gene

No ASD Table

Relevant External Links for ENSG00000251818 Gene

GeneLoc Exon Structure for
ENSG00000251818

Expression for ENSG00000251818 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000251818 Gene

genes like me logo Genes that share expression patterns with ENSG00000251818: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000251818 Gene

Orthologs for ENSG00000251818 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000251818 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA20 33
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA20 33
  • 69 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SCARNA20 33 33
  • 62 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SCARNA20 33
  • 58 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA20 33
  • 51 (a)
OneToMany
chicken
(Gallus gallus)
Aves SCARNA20 33
  • 53 (a)
OneToMany
Species where no ortholog for ENSG00000251818 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ENSG00000251818 Gene

ENSEMBL:
Gene Tree for ENSG00000251818 (if available)
TreeFam:
Gene Tree for ENSG00000251818 (if available)

Paralogs for ENSG00000251818 Gene

No data available for Paralogs for ENSG00000251818 Gene

Variants for ENSG00000251818 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000251818 Gene

Disorders for ENSG00000251818 Gene

No disorders were found for ENSG00000251818 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000251818 Gene

Publications for ENSG00000251818 Gene

No publications were found for ENSG00000251818 Gene.

No data available for External Links for ENSG00000251818 Gene

Products for ENSG00000251818 Gene

Sources for ENSG00000251818 Gene