Aliases for ENSG00000251171 Gene

Subcategory (RNA class) for ENSG00000251171 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000251171 Gene

  • Novel Transcript 5
  • HSALNG0038466 169
  • NONHSAG039300 94
  • Lnc-PALLD-2 170
  • AC096741.1 5

External Ids for ENSG00000251171 Gene

Previous GeneCards Identifiers for ENSG00000251171 Gene

  • GC04P170122

Summaries for ENSG00000251171 Gene

GeneCards Summary for ENSG00000251171 Gene

ENSG00000251171 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000251171 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000251171 Gene

Genomics for ENSG00000251171 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000251171 Gene

Promoters and enhancers for ENSG00000251171 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J169200 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.2 206 5.2 ZNF121 ZNF384 MAFK SP7 IKZF1 RXRA FOXA2 IKZF2 ZNF316 ZNF239 ENSG00000251171 SH3RF1 HSALNG0038468
GH04J169007 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 8.9 -192.7 -192659 4.3 ZBTB40 CTCF SIX5 SMARCE1 POLR2A TCF7L2 HDAC2 NR2F6 ATF1 CREB1 CBR4 ENSG00000251445 ENSG00000251171 lnc-SH3RF1-2
GH04J169068 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -131.1 -131128 5.1 SREBF1 MLX FOXA1 RBPJ TCF7L2 USF2 ZNF217 CREB1 MIXL1 NFYC LOC105377527 ENSG00000251171 lnc-SH3RF1-1 piR-58721
GH04J169156 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE dbSUPER 11.5 -42.3 -42335 6.3 ZNF121 PRDM1 POLR2A ATF7 NFE2 JUN JUND ZNF664 FEZF1 ATF2 SH3RF1 ENSG00000251171 RPL6P12 lnc-SH3RF1-1
GH04J169218 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.5 +22.9 22906 12.2 SIN3A RAD21 SP1 MAFK SP7 CREB1 POLR2A CEBPA RXRA PRDM10 SH3RF1 ENSG00000251171 PALLD HSALNG0038468
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000251171 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000251171 Gene

Genomic Locations for ENSG00000251171 Gene
chr4:169,201,794-169,220,349
(GRCh38/hg38)
Size:
18,556 bases
Orientation:
Plus strand
chr4:170,122,945-170,141,500
(GRCh37/hg19)
Size:
18,556 bases
Orientation:
Plus strand

Genomic View for ENSG00000251171 Gene

Genes around ENSG00000251171 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000251171 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000251171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000251171 Gene

Proteins for ENSG00000251171 Gene

Post-translational modifications for ENSG00000251171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000251171 Gene

Domains & Families for ENSG00000251171 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000251171 Gene

Function for ENSG00000251171 Gene

Phenotypes From GWAS Catalog for ENSG00000251171 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000251171 Gene

Localization for ENSG00000251171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000251171 Gene

Pathways & Interactions for ENSG00000251171 Gene

PathCards logo

SuperPathways for ENSG00000251171 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000251171 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000251171 Gene

Drugs & Compounds for ENSG00000251171 Gene

No Compound Related Data Available

Transcripts for ENSG00000251171 Gene

mRNA/cDNA for ENSG00000251171 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) NONCODE transcripts :
(2) LncBook transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000251171 Gene

No ASD Table

Relevant External Links for ENSG00000251171 Gene

GeneLoc Exon Structure for
ENSG00000251171

Expression for ENSG00000251171 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000251171 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000251171 Gene

This gene is overexpressed in Testis (x45.8).
genes like me logo Genes that share expression patterns with ENSG00000251171: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000251171 Gene

Orthologs for ENSG00000251171 Gene

Evolution for ENSG00000251171 Gene

ENSEMBL:
Gene Tree for ENSG00000251171 (if available)
TreeFam:
Gene Tree for ENSG00000251171 (if available)

No data available for Orthologs for ENSG00000251171 Gene

Paralogs for ENSG00000251171 Gene

No data available for Paralogs for ENSG00000251171 Gene

Variants for ENSG00000251171 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000251171 Gene

Disorders for ENSG00000251171 Gene

No disorders were found for ENSG00000251171 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000251171 Gene

Publications for ENSG00000251171 Gene

No publications were found for ENSG00000251171 Gene.

No data available for External Links for ENSG00000251171 Gene

Products for ENSG00000251171 Gene

Sources for ENSG00000251171 Gene