Aliases for ENSG00000251171 Gene

Subcategory (RNA class) for ENSG00000251171 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000251171 Gene

  • Novel Transcript 5
  • NONHSAG039300.2 91
  • HSALNG0038466 164
  • Lnc-PALLD-2 165
  • AC096741.1 5

External Ids for ENSG00000251171 Gene

Previous GeneCards Identifiers for ENSG00000251171 Gene

  • GC04P170122

Summaries for ENSG00000251171 Gene

GeneCards Summary for ENSG00000251171 Gene

ENSG00000251171 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000251171 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000251171 Gene

Genomics for ENSG00000251171 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000251171 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J169200 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.2 206 5.2 IKZF2 ZNF239 DPF2 RUNX3 FOXA2 ZNF316 MAFF MAFK JUND IKZF1 ENSG00000251171 SH3RF1 HSALNG0038468 CBR4
GH04J169007 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 8.9 -192.7 -192659 4.3 CREB1 CTCF ATF7 PRDM10 REST ZNF629 TFE3 ZNF512 SIX5 LEF1 CBR4 ENSG00000251445 ENSG00000251171 lnc-SH3RF1-2 DDX60L
GH04J169068 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -131.1 -131128 5.1 HNRNPL CREB1 GATAD2A TEAD4 REST TFE3 NFKBIZ RCOR2 ZHX2 FOXA1 ENSG00000251171 LOC105377527 lnc-SH3RF1-1 piR-58721 CBR4 SH3RF1
GH04J169156 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE dbSUPER 11.6 -42.3 -42335 6.3 ATF7 PRDM1 ZNF600 JUND NFE2 ATF2 NR2F2 FEZF1 ATF3 JUN SH3RF1 ENSG00000251171 RPL6P12 LOC105377527 CBR4
GH04J169218 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.5 +22.9 22906 12.2 PRDM10 ZNF629 FOXA1 PATZ1 SP1 YY1 CEBPA ZBTB44 CEBPB ZNF639 SH3RF1 ENSG00000251171 PALLD HSALNG0038468 CBR4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000251171 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000251171 Gene

Genomic Locations for ENSG00000251171 Gene
chr4:169,201,794-169,222,464
(GRCh38/hg38)
Size:
20,671 bases
Orientation:
Plus strand
chr4:170,122,945-170,141,500
(GRCh37/hg19)
Size:
18,556 bases
Orientation:
Plus strand

Genomic View for ENSG00000251171 Gene

Genes around ENSG00000251171 on UCSC Golden Path with GeneCards custom track
ENSG00000251171 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000251171 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000251171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000251171 Gene

Proteins for ENSG00000251171 Gene

Post-translational modifications for ENSG00000251171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000251171 Gene

Domains & Families for ENSG00000251171 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000251171 Gene

Function for ENSG00000251171 Gene

Phenotypes From GWAS Catalog for ENSG00000251171 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000251171 Gene

Localization for ENSG00000251171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000251171 Gene

Pathways & Interactions for ENSG00000251171 Gene

PathCards logo

SuperPathways for ENSG00000251171 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000251171 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000251171 Gene

Drugs & Compounds for ENSG00000251171 Gene

No Compound Related Data Available

Transcripts for ENSG00000251171 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000251171 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001A83A6_9606 lncRNA 637 4

Ensembl: ENST00000510225 (view in UCSC) ,

LncBook: HSALNT0080612,

LNCipedia: lnc-PALLD-2:1,

NONCODE: NONHSAT099155.2,

URS0000EB9702_9606 lncRNA 2980 1

LncBook: HSALNT0080614,

ENSG00000251171 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000251171 Gene

No ASD Table

Relevant External Links for ENSG00000251171 Gene

GeneLoc Exon Structure for
ENSG00000251171

No data available for mRNA/cDNA for ENSG00000251171 Gene

Expression for ENSG00000251171 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000251171 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000251171 Gene

This gene is overexpressed in Testis (x45.8).
genes like me logo Genes that share expression patterns with ENSG00000251171: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000251171 Gene

Orthologs for ENSG00000251171 Gene

Evolution for ENSG00000251171 Gene

ENSEMBL:
Gene Tree for ENSG00000251171 (if available)
TreeFam:
Gene Tree for ENSG00000251171 (if available)

No data available for Orthologs for ENSG00000251171 Gene

Paralogs for ENSG00000251171 Gene

No data available for Paralogs for ENSG00000251171 Gene

Variants for ENSG00000251171 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000251171 Gene

Disorders for ENSG00000251171 Gene

Additional Disease Information for ENSG00000251171

No disorders were found for ENSG00000251171 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000251171 Gene

Publications for ENSG00000251171 Gene

No publications were found for ENSG00000251171 Gene.

No data available for Mastermind for ENSG00000251171 Gene

Products for ENSG00000251171 Gene

Sources for ENSG00000251171 Gene