Aliases for ENSG00000250899 Gene

Subcategory (RNA class) for ENSG00000250899 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000250899 Gene

  • Novel Transcript 5
  • HSALNG0088626 167
  • NONHSAG010207 92
  • Lnc-TEAD4-1 168
  • AC125807.2 5

External Ids for ENSG00000250899 Gene

Previous GeneCards Identifiers for ENSG00000250899 Gene

  • GC01M165614
  • GC12P003150

Summaries for ENSG00000250899 Gene

GeneCards Summary for ENSG00000250899 Gene

ENSG00000250899 is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ENSG00000250899 include Pancreatic Ductal Adenocarcinoma and Squamous Cell Carcinoma.

Additional gene information for ENSG00000250899 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000250899 Gene

Genomics for ENSG00000250899 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000250899 Gene

Promoters and enhancers for ENSG00000250899 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003041 Enhancer 0.8 Ensembl ENCODE 500.7 +1.1 1081 2.2 CTCF RAD21 SMC3 RBM25 WT1 MEF2B RBM22 MAZ EBF1 ZNF654 ENSG00000250899 piR-57355 HSALNG0088628
GH12J002980 Enhancer 0.8 Ensembl ENCODE dbSUPER 7.4 -59.1 -59120 2.9 ZNF10 RBM22 ZFHX2 CTCF AGO2 DACH1 NRIP2 FOXM1 RHNO1 TULP3 ITFG2 ENSG00000250899 TEAD4 lnc-FOXM1-2
GH12J003727 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.2 +687.2 687164 6.8 BCL11A TCF12 CBFB ARNT MEF2B SPI1 TAL1 FOS IKZF1 BMI1 ENSG00000250899 RNU6-174P RF00026-214 piR-54377 CRACR2A lnc-CRACR2A-5
GH12J002974 Enhancer 0.7 ENCODE dbSUPER 6.4 -66.7 -66702 1.1 SP2 RBM22 SIN3A KLF1 AGO2 POLR2A ZBTB6 ZNF600 ENSG00000250899 TEAD4 lnc-FOXM1-2
GH12J004009 Enhancer 0.6 ENCODE 5.1 +968.6 968624 1 POLR2G NCOR1 DRAP1 CEBPB HNF1A GATAD2A EP300 POLR2A ZNF239 RBFOX2 HSPA8P5 ENSG00000250899 ENSG00000256969 lnc-PARP11-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000250899 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000250899 Gene

Genomic Locations for ENSG00000250899 Gene
chr12:3,041,437-3,044,950
(GRCh38/hg38)
Size:
3,514 bases
Orientation:
Plus strand
chr12:3,150,603-3,154,116
(GRCh37/hg19)
Size:
3,514 bases
Orientation:
Plus strand

Genomic View for ENSG00000250899 Gene

Genes around ENSG00000250899 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000250899 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000250899 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000250899 Gene

Proteins for ENSG00000250899 Gene

Post-translational modifications for ENSG00000250899 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000250899 Gene

Domains & Families for ENSG00000250899 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000250899 Gene

Function for ENSG00000250899 Gene

Phenotypes From GWAS Catalog for ENSG00000250899 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000250899 Gene

Localization for ENSG00000250899 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000250899 Gene

Pathways & Interactions for ENSG00000250899 Gene

PathCards logo

SuperPathways for ENSG00000250899 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000250899 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000250899 Gene

Drugs & Compounds for ENSG00000250899 Gene

No Compound Related Data Available

Transcripts for ENSG00000250899 Gene

mRNA/cDNA for ENSG00000250899 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000250899 Gene

No ASD Table

Relevant External Links for ENSG00000250899 Gene

GeneLoc Exon Structure for
ENSG00000250899

Expression for ENSG00000250899 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000250899 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000250899 Gene

This gene is overexpressed in Muscle - Skeletal (x10.7).
genes like me logo Genes that share expression patterns with ENSG00000250899: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000250899 Gene

Orthologs for ENSG00000250899 Gene

Evolution for ENSG00000250899 Gene

ENSEMBL:
Gene Tree for ENSG00000250899 (if available)
TreeFam:
Gene Tree for ENSG00000250899 (if available)

No data available for Orthologs for ENSG00000250899 Gene

Paralogs for ENSG00000250899 Gene

No data available for Paralogs for ENSG00000250899 Gene

Variants for ENSG00000250899 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000250899 Gene

Disorders for ENSG00000250899 Gene

MalaCards: The human disease database

(3) MalaCards diseases for ENSG00000250899 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
pancreatic ductal adenocarcinoma
  • ductal adenocarcinoma of the pancreas
squamous cell carcinoma
  • epidermoid carcinoma
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with ENSG00000250899: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000250899 Gene

Publications for ENSG00000250899 Gene

No publications were found for ENSG00000250899 Gene.

No data available for Mastermind for ENSG00000250899 Gene

Products for ENSG00000250899 Gene

Sources for ENSG00000250899 Gene