Aliases for ENSG00000250397 Gene

Subcategory (RNA class) for ENSG00000250397 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000250397 Gene

  • Novel Transcript 5
  • NONHSAG007357.2 91
  • Lnc-CHID1-1 165
  • AP006623.1 5

External Ids for ENSG00000250397 Gene

Summaries for ENSG00000250397 Gene

GeneCards Summary for ENSG00000250397 Gene

ENSG00000250397 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000250397 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000250397 Gene

Genomics for ENSG00000250397 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000250397 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J000858 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 -0.1 -105 2.2 ZIC2 RBFOX2 PATZ1 ZNF600 ZNF341 ZBTB20 SP2 EGR1 ZBTB10 POLR2A ENSG00000250397 CD151 TMEM80 lnc-POLR2L-4 TSPAN4 CHID1
GH11J001780 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.3 -922.5 -922495 3.4 RNF2 CREB1 IKZF1 PKNOX1 HDAC1 SOX6 ZFX MTA3 CEBPB CTBP1 LSP1 TNNI2 ENSG00000250397 SYT8 TOLLIP LOC105376517 RPL36AP39 CTSD
GH11J000869 Enhancer 0.5 Ensembl 5.7 -10.4 -10410 0.5 ZIC2 POLR2A CTCF TFAP4 RAD21 lnc-POLR2L-4 piR-43105-066 CD151 ENSG00000250397 TSPAN4 CHID1
GH11J000861 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.7 -3.0 -2992 2 HNRNPL IKZF1 ZNF692 ZIC2 REST POLR2A ZNF600 NRF1 KLF9 ZBTB20 CD151 CHID1 ENSG00000250397 lnc-POLR2L-4 TSPAN4
GH11J000851 Enhancer 0.5 ENCODE 0.4 +8.2 8206 0.1 CTCF REST RAD21 SIN3A GLIS1 SMARCA4 EGR2 GLIS2 lnc-POLR2L-3 ENSG00000250397 TSPAN4 CHID1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000250397 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000250397 Gene

Genomic Locations for ENSG00000250397 Gene
chr11:856,880-859,796
(GRCh38/hg38)
Size:
2,917 bases
Orientation:
Minus strand
chr11:856,880-859,795
(GRCh37/hg19)
Size:
2,916 bases
Orientation:
Minus strand

Genomic View for ENSG00000250397 Gene

Genes around ENSG00000250397 on UCSC Golden Path with GeneCards custom track
ENSG00000250397 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000250397 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000250397 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000250397 Gene

Proteins for ENSG00000250397 Gene

Post-translational modifications for ENSG00000250397 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000250397 Gene

Domains & Families for ENSG00000250397 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000250397 Gene

Function for ENSG00000250397 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000250397 Gene

Localization for ENSG00000250397 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000250397 Gene

Pathways & Interactions for ENSG00000250397 Gene

PathCards logo

SuperPathways for ENSG00000250397 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000250397 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000250397 Gene

Drugs & Compounds for ENSG00000250397 Gene

No Compound Related Data Available

Transcripts for ENSG00000250397 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000250397 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000044D8C8_9606 lncRNA 2061 3

Ensembl: ENST00000506172 (view in UCSC) ,

LNCipedia: lnc-CHID1-1:1,

NONCODE: NONHSAT017352.2,

URS00009B5909_9606 lncRNA 1828 2

LNCipedia: lnc-CHID1-1:2,

NONCODE: NONHSAT017351.2,

URS00009BA85F_9606 lncRNA 2061 1

NONCODE: NONHSAT159989.1,

ENSG00000250397 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000250397 Gene

No ASD Table

Relevant External Links for ENSG00000250397 Gene

GeneLoc Exon Structure for
ENSG00000250397

No data available for mRNA/cDNA for ENSG00000250397 Gene

Expression for ENSG00000250397 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000250397 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000250397 Gene

This gene is overexpressed in Brain - Cerebellum (x5.2) and Brain - Cerebellar Hemisphere (x4.8).
genes like me logo Genes that share expression patterns with ENSG00000250397: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000250397 Gene

Orthologs for ENSG00000250397 Gene

Evolution for ENSG00000250397 Gene

ENSEMBL:
Gene Tree for ENSG00000250397 (if available)
TreeFam:
Gene Tree for ENSG00000250397 (if available)

No data available for Orthologs for ENSG00000250397 Gene

Paralogs for ENSG00000250397 Gene

No data available for Paralogs for ENSG00000250397 Gene

Variants for ENSG00000250397 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000250397 Gene

Disorders for ENSG00000250397 Gene

No disorders were found for ENSG00000250397 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000250397 Gene

Publications for ENSG00000250397 Gene

No publications were found for ENSG00000250397 Gene.

No data available for Mastermind for ENSG00000250397 Gene

Products for ENSG00000250397 Gene

Sources for ENSG00000250397 Gene