Aliases for ENSG00000250166 Gene

Data sources for ENSG00000250166 Gene:

Subcategory (RNA class) for ENSG00000250166 Gene

lncRNA

Aliases for ENSG00000250166 Gene

External Ids for ENSG00000250166 Gene

Previous GeneCards Identifiers for ENSG00000250166 Gene

  • GC04M125421
  • GC12P022754
  • GC12P022601

Summaries for ENSG00000250166 Gene

GeneCards Summary for ENSG00000250166 Gene

ENSG00000250166 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000250166 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000250166 Gene

Genomics for ENSG00000250166 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000250166 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J022408 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 250.7 +0.6 569 1.7 BCL11A IRF4 CBFB BHLHE40 BATF ZNF24 IKZF1 MTA3 BMI1 NR2F1 ENSG00000250166 C2CD5 ENSG00000256714 lnc-ST8SIA1-3 ST8SIA1 CMAS
GH12J022410 Enhancer 0.7 ENCODE dbSUPER 250.7 +1.9 1941 1 ZNF217 CUX1 CTBP1 SMARCE1 PKNOX1 DPF2 NFIB FOS RCOR1 EP300 ENSG00000250166 ST8SIA1 ENSG00000256714 lnc-ST8SIA1-3 CMAS
GH12J022409 Enhancer 0.3 Ensembl dbSUPER 250.7 -1.8 -1770 0.2 ENSG00000250166 piR-32461-045 ENSG00000256714 lnc-ST8SIA1-3 ST8SIA1 CMAS
GH12J022542 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 14.7 +135.1 135108 2.8 CHD2 TBP ZBTB10 SP1 MXD4 CEBPA NR2C1 MNT ETS1 IRF2 C2CD5 lnc-ST8SIA1-8 ENSG00000250166 lnc-ETNK1-11 ST8SIA1
GH12J022436 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +28.3 28322 1.7 NFIB NFIC ST8SIA1 lnc-ST8SIA1-3 C2CD5 ENSG00000250166 ENSG00000256973
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000250166 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000250166 Gene

Latest Assembly
chr12:22,408,871-22,620,534
(GRCh38/hg38)
Size:
211,664 bases
Orientation:
Plus strand

Previous Assembly
chr12:22,754,359-22,771,801
(GRCh37/hg19 by Ensembl)
Size:
17,443 bases
Orientation:
Plus strand

Genomic View for ENSG00000250166 Gene

Genes around ENSG00000250166 on UCSC Golden Path with GeneCards custom track
ENSG00000250166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000250166 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000250166 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000250166 Gene

Proteins for ENSG00000250166 Gene

Post-translational modifications for ENSG00000250166 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000250166 Gene

Domains & Families for ENSG00000250166 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000250166 Gene

Function for ENSG00000250166 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000250166 Gene

Localization for ENSG00000250166 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000250166 Gene

Pathways & Interactions for ENSG00000250166 Gene

PathCards logo

SuperPathways for ENSG00000250166 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000250166 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000250166 Gene

Drugs & Compounds for ENSG00000250166 Gene

No Compound Related Data Available

Transcripts for ENSG00000250166 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000250166 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEEFB4_9606 lncRNA 990 1

Ensembl: ENST00000670175 (view in UCSC) ,

URS0000EF0D23_9606 lncRNA 917 1

Ensembl: ENST00000658064 (view in UCSC) ,

URS0000EEB042_9606 lncRNA 857 1

Ensembl: ENST00000661495 (view in UCSC) ,

URS0000EF4800_9606 lncRNA 718 1

Ensembl: ENST00000508615 (view in UCSC) ,

URS000047B4BC_9606 lncRNA 429 3

LncBook: HSALNT0186532,

LNCipedia: lnc-ETNK1-1:1,

NONCODE: NONHSAT027284.2,

ENSG00000250166 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000250166 Gene

No ASD Table

Relevant External Links for ENSG00000250166 Gene

GeneLoc Exon Structure for
ENSG00000250166

No data available for mRNA/cDNA for ENSG00000250166 Gene

Expression for ENSG00000250166 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000250166 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000250166 Gene

This gene is overexpressed in Brain - Amygdala (x9.2), Brain - Hippocampus (x5.7), Brain - Substantia nigra (x4.6), Brain - Caudate (basal ganglia) (x4.4), Brain - Anterior cingulate cortex (BA24) (x4.3), and Brain - Nucleus accumbens (basal ganglia) (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000250166: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000250166 Gene

Orthologs for ENSG00000250166 Gene

Evolution for ENSG00000250166 Gene

ENSEMBL:
Gene Tree for ENSG00000250166 (if available)
TreeFam:
Gene Tree for ENSG00000250166 (if available)

No data available for Orthologs for ENSG00000250166 Gene

Paralogs for ENSG00000250166 Gene

No data available for Paralogs for ENSG00000250166 Gene

Variants for ENSG00000250166 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000250166 Gene

Disorders for ENSG00000250166 Gene

Additional Disease Information for ENSG00000250166

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000250166 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000250166 Gene

Publications for ENSG00000250166 Gene

No publications were found for ENSG00000250166 Gene.

No data available for Mastermind for ENSG00000250166 Gene

Products for ENSG00000250166 Gene

Sources for ENSG00000250166 Gene