Aliases for ENSG00000249955 Gene

Subcategory (RNA class) for ENSG00000249955 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000249955 Gene

  • Novel Transcript 5
  • NONHSAG039314.2 91
  • HSALNG0038499 164
  • Lnc-CLCN3-3 165
  • AC084866.1 5

External Ids for ENSG00000249955 Gene

Previous GeneCards Identifiers for ENSG00000249955 Gene

  • GC04P170902

Summaries for ENSG00000249955 Gene

GeneCards Summary for ENSG00000249955 Gene

ENSG00000249955 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000249955 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000249955 Gene

Genomics for ENSG00000249955 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000249955 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J170003 Promoter/Enhancer 1 EPDnew Ensembl dbSUPER 11.9 +22.2 22157 0.6 ZNF316 MAFK MAFG BACH1 SPI1 EMSY MFAP3L AADAT ENSG00000249955 LINC02275 ENSG00000251200 RF00017-4453 HPF1 MG828730-051
GH04J169933 Enhancer 0.9 Ensembl ENCODE 11.6 -47.1 -47146 2.5 HDAC1 SOX6 TCF12 EP300 CTBP1 NFE2 ZNF316 NCOR1 MAFG FOXM1 MFAP3L LINC02275 ENSG00000249955 AADAT piR-45035-145 ENSG00000287298 ENSG00000288003 LOC105377530 HPF1 MG828730-051
GH04J170004 Enhancer 0.7 dbSUPER 11.9 +23.6 23564 2 PRDM10 ZNF629 TSHZ1 ZSCAN5C OSR2 ZNF580 BCL11A ZBTB17 SCRT1 WT1 RF00017-4453 MFAP3L ENSG00000249955 LINC02275 ENSG00000251200 HPF1 MG828730-051
GH04J169956 Enhancer 0.2 Ensembl 12.6 -25.2 -25243 0.6 lnc-CLCN3-7 MFAP3L ENSG00000249955 RF00017-4452 ENSG00000251200 LINC02275 HPF1 MG828730-051
GH04J170741 Enhancer 0.3 Ensembl 4.5 +761.1 761057 0.8 NANOG LINC02382 ENSG00000249955 piR-38377 AADAT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000249955 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000249955 Gene

Genomic Locations for ENSG00000249955 Gene
chr4:169,981,744-169,994,488
(GRCh38/hg38)
Size:
12,745 bases
Orientation:
Plus strand
chr4:170,902,898-170,914,957
(GRCh37/hg19)
Size:
12,060 bases
Orientation:
Plus strand

Genomic View for ENSG00000249955 Gene

Genes around ENSG00000249955 on UCSC Golden Path with GeneCards custom track
ENSG00000249955 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000249955 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000249955 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000249955 Gene

Proteins for ENSG00000249955 Gene

Post-translational modifications for ENSG00000249955 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000249955 Gene

Domains & Families for ENSG00000249955 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000249955 Gene

Function for ENSG00000249955 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000249955 Gene

Localization for ENSG00000249955 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000249955 Gene

Pathways & Interactions for ENSG00000249955 Gene

PathCards logo

SuperPathways for ENSG00000249955 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000249955 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000249955 Gene

Drugs & Compounds for ENSG00000249955 Gene

No Compound Related Data Available

Transcripts for ENSG00000249955 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000249955 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF672B_9606 lncRNA 1239 1

Ensembl: ENST00000508955 (view in UCSC) ,

URS000057A930_9606 lncRNA 554 3

LncBook: HSALNT0080676,

LNCipedia: lnc-CLCN3-3:1,

NONCODE: NONHSAT099175.2,

URS00009B8D7B_9606 lncRNA 554 2

LncBook: HSALNT0080677,

NONCODE: NONHSAT199386.1,

ENSG00000249955 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000249955 Gene

No ASD Table

Relevant External Links for ENSG00000249955 Gene

GeneLoc Exon Structure for
ENSG00000249955

No data available for mRNA/cDNA for ENSG00000249955 Gene

Expression for ENSG00000249955 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000249955 Gene

genes like me logo Genes that share expression patterns with ENSG00000249955: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000249955 Gene

Orthologs for ENSG00000249955 Gene

Evolution for ENSG00000249955 Gene

ENSEMBL:
Gene Tree for ENSG00000249955 (if available)
TreeFam:
Gene Tree for ENSG00000249955 (if available)

No data available for Orthologs for ENSG00000249955 Gene

Paralogs for ENSG00000249955 Gene

No data available for Paralogs for ENSG00000249955 Gene

Variants for ENSG00000249955 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000249955 Gene

Disorders for ENSG00000249955 Gene

No disorders were found for ENSG00000249955 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000249955 Gene

Publications for ENSG00000249955 Gene

No publications were found for ENSG00000249955 Gene.

No data available for Mastermind for ENSG00000249955 Gene

Products for ENSG00000249955 Gene

Sources for ENSG00000249955 Gene