Aliases for ENSG00000249945 Gene

Data sources for ENSG00000249945 Gene:

Subcategory (RNA class) for ENSG00000249945 Gene

lncRNA

Aliases for ENSG00000249945 Gene

External Ids for ENSG00000249945 Gene

Previous GeneCards Identifiers for ENSG00000249945 Gene

  • GC04M176379

Summaries for ENSG00000249945 Gene

GeneCards Summary for ENSG00000249945 Gene

ENSG00000249945 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000249945 Gene

Additional gene information for ENSG00000249945 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000249945 Gene

Genomics for ENSG00000249945 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000249945 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J175443 Enhancer 0.7 Ensembl ENCODE 13.3 +126.2 126242 2.4 CUX1 CTBP1 CTCF SMARCE1 FOXA1 DPF2 ZNF687 RAD21 ZNF579 ZNF592 ENSG00000249945 ENSG00000248551 lnc-GPM6A-2 RF00017-4458 GPM6A ADAM29
GH04J175531 Enhancer 0.5 Ensembl 0.3 +39.1 39123 0.2 CUX1 JUND DPF2 FOSL2 RFX1 piR-59136-024 piR-48759-239 ENSG00000249945 GPM6A ADAM29
GH04J175458 Enhancer 0.7 Ensembl ENCODE 0.1 +113.0 113003 0.4 ZNF217 MBD2 CTBP1 SMARCE1 FOXA1 DPF2 NCOA3 KLF4 piR-37567-160 ENSG00000248551 ENSG00000249945 ADAM29 GPM6A
GH04J175469 Enhancer 0.6 Ensembl ENCODE 0.1 +101.0 101022 1.2 JUND NFIB EP300 RF02002-038 piR-37656-205 ENSG00000249945 GPM6A ADAM29
GH04J175561 Enhancer 0.2 Ensembl 0.4 +9.2 9222 0.4 HSALNG0038681 ENSG00000249945 GPM6A ADAM29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000249945 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000249945 Gene

Latest Assembly
chr4:175,457,679-175,571,023
(GRCh38/hg38)
Size:
113,345 bases
Orientation:
Minus strand

Previous Assembly
chr4:176,379,440-176,387,848
(GRCh37/hg19 by Ensembl)
Size:
8,409 bases
Orientation:
Minus strand

Genomic View for ENSG00000249945 Gene

Genes around ENSG00000249945 on UCSC Golden Path with GeneCards custom track
ENSG00000249945 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000249945 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000249945 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000249945 Gene

Proteins for ENSG00000249945 Gene

Post-translational modifications for ENSG00000249945 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000249945 Gene

Domains & Families for ENSG00000249945 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000249945 Gene

Function for ENSG00000249945 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000249945 Gene

Localization for ENSG00000249945 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000249945 Gene

Pathways & Interactions for ENSG00000249945 Gene

PathCards logo

SuperPathways for ENSG00000249945 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000249945 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000249945 Gene

Drugs & Compounds for ENSG00000249945 Gene

No Compound Related Data Available

Transcripts for ENSG00000249945 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000249945 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002CFC92_9606 lncRNA 490 4

Ensembl: ENST00000506984 (view in UCSC) ,

LncBook: HSALNT0081210,

LNCipedia: lnc-GPM6A-1:1,

NONCODE: NONHSAT099342.2,

URS0000EF1555_9606 lncRNA 1422 1

Ensembl: ENST00000664617 (view in UCSC) ,

URS0001BCB574_9606 lncRNA 2893 1

LncBook: HSALNT0081208,

URS0001BE1788_9606 lncRNA 1830 1

LncBook: HSALNT0081209,

URS0001BFA13D_9606 lncRNA 731 1

LncBook: HSALNT0081211,

ENSG00000249945 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000249945 Gene

No ASD Table

Relevant External Links for ENSG00000249945 Gene

GeneLoc Exon Structure for
ENSG00000249945

No data available for mRNA/cDNA for ENSG00000249945 Gene

Expression for ENSG00000249945 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000249945 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000249945 Gene

This gene is overexpressed in Testis (x42.9) and Brain - Amygdala (x10.1).
genes like me logo Genes that share expression patterns with ENSG00000249945: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000249945 Gene

Orthologs for ENSG00000249945 Gene

Evolution for ENSG00000249945 Gene

ENSEMBL:
Gene Tree for ENSG00000249945 (if available)
TreeFam:
Gene Tree for ENSG00000249945 (if available)

No data available for Orthologs for ENSG00000249945 Gene

Paralogs for ENSG00000249945 Gene

No data available for Paralogs for ENSG00000249945 Gene

Variants for ENSG00000249945 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000249945 Gene

Disorders for ENSG00000249945 Gene

Additional Disease Information for ENSG00000249945

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000249945 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000249945 Gene

Publications for ENSG00000249945 Gene

No publications were found for ENSG00000249945 Gene.

No data available for Mastermind for ENSG00000249945 Gene

Products for ENSG00000249945 Gene

Sources for ENSG00000249945 Gene