Aliases for ENSG00000249479 Gene

Data sources for ENSG00000249479 Gene:

RNA type for ENSG00000249479 Gene

lncRNA

Aliases for ENSG00000249479 Gene

External Ids for ENSG00000249479 Gene

Previous GeneCards Identifiers for ENSG00000249479 Gene

  • GC04P157563

Summaries for ENSG00000249479 Gene

GeneCards Summary for ENSG00000249479 Gene

ENSG00000249479 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000249479 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000249479 Gene

Genomics for ENSG00000249479 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000249479 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J156642 Promoter/Enhancer 0.7 EPDnew Ensembl 250.7 +0.3 335 0.4 JUND EP300 ENSG00000249479 LINC02272 PDGFC CTSO
GH04J156769 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 +130.9 130865 7.3 JUND CEBPB FEZF1 REST ZNF843 PRDM6 SPI1 ZNF664 BHLHE40 GATA2 HSALNG0038097 lnc-GLRB-9 PDGFC ENSG00000250622 ENSG00000248629 ENSG00000249479 LINC02272 HSALNG0038095 lnc-CTSO-2 CTSO
GH04J156597 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 10.9 -44.8 -44820 3.3 RXRA BHLHE40 FOS SCRT2 NR2F2 ENSG00000249479 LINC02272 RNU6-582P ENSG00000249819 GRIA2 HSALNG0038085 piR-32559-330 PDGFC CTSO
GH04J156829 Enhancer 0.8 Ensembl ENCODE dbSUPER 9.9 +187.2 187215 3.4 ATF3 SPI1 CEBPB HLF EP300 CEBPG ENSG00000249479 LINC02272 ENSG00000248629 lnc-CTSO-2 lnc-GLRB-9 HSALNG0038097 PDGFC CTSO
GH04J156614 Enhancer 0.7 Ensembl ENCODE 10.9 -27.0 -27047 2.3 MAFF ZNF316 MAFK NFE2L2 MAFG JUND EP300 EMSY LINC02272 ENSG00000249479 piR-32559-331 PDGFC CTSO
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000249479 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000249479 Gene

Latest Assembly
chr4:156,642,265-156,677,192
(GRCh38/hg38)
Size:
34,928 bases
Orientation:
Plus strand

Previous Assembly
chr4:157,563,732-157,564,721
(GRCh37/hg19 by Ensembl)
Size:
990 bases
Orientation:
Plus strand

Genomic View for ENSG00000249479 Gene

Genes around ENSG00000249479 on UCSC Golden Path with GeneCards custom track
ENSG00000249479 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000249479 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000249479 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000249479 Gene

Proteins for ENSG00000249479 Gene

Post-translational modifications for ENSG00000249479 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000249479 Gene

Domains & Families for ENSG00000249479 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000249479 Gene

Function for ENSG00000249479 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000249479 Gene

Localization for ENSG00000249479 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000249479 Gene

Pathways & Interactions for ENSG00000249479 Gene

PathCards logo

SuperPathways for ENSG00000249479 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000249479 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000249479 Gene

Drugs & Compounds for ENSG00000249479 Gene

No Compound Related Data Available

Transcripts for ENSG00000249479 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000249479 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002C26A0_9606 lncRNA 175 1

Ensembl: ENST00000507972 (view in UCSC) ,

URS00008BDBCE_9606 lncRNA 793 3

LncBook: HSALNT0079912,

LNCipedia: lnc-GLRB-4:1,

NONCODE: NONHSAT098950.2,

URS00008C0270_9606 lncRNA 505 3

LncBook: HSALNT0079913,

LNCipedia: lnc-GLRB-4:2,

NONCODE: NONHSAT098951.2,

URS00009BEB30_9606 lncRNA 300 2

LncBook: HSALNT0079914,

NONCODE: NONHSAT199314.1,

ENSG00000249479 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000249479 Gene

No ASD Table

Relevant External Links for ENSG00000249479 Gene

GeneLoc Exon Structure for
ENSG00000249479

No data available for mRNA/cDNA for ENSG00000249479 Gene

Expression for ENSG00000249479 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000249479 Gene

Orthologs for ENSG00000249479 Gene

Evolution for ENSG00000249479 Gene

ENSEMBL:
Gene Tree for ENSG00000249479 (if available)
TreeFam:
Gene Tree for ENSG00000249479 (if available)

No data available for Orthologs for ENSG00000249479 Gene

Paralogs for ENSG00000249479 Gene

No data available for Paralogs for ENSG00000249479 Gene

Variants for ENSG00000249479 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000249479 Gene

Disorders for ENSG00000249479 Gene

Additional Disease Information for ENSG00000249479

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000249479 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000249479 Gene

Publications for ENSG00000249479 Gene

No publications were found for ENSG00000249479 Gene.

No data available for Mastermind for ENSG00000249479 Gene

Products for ENSG00000249479 Gene

Sources for ENSG00000249479 Gene