ENSG00000249049 Gene (RNA Gene)

 

GC04M091319
GIFtS:
5
See more...

Aliases for ENSG00000249049 Gene

Subcategory (RNA class) for ENSG00000249049 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for ENSG00000249049 Gene

  • Novel Transcript, Antisense To CCSER1 5
  • AC074124.1 5
  • Lnc-SNCA-5 165

External Ids for ENSG00000249049 Gene

Previous GeneCards Identifiers for ENSG00000249049 Gene

  • GC04M092240

Summaries for ENSG00000249049 Gene

GeneCards Summary for ENSG00000249049 Gene

ENSG00000249049 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000249049 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000249049 Gene

Genomics for ENSG00000249049 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000249049 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J091288 Enhancer 0.4 Ensembl 0.3 +36.4 36405 0.2 RFX1 RELB BMI1 piR-31937-160 ENSG00000249049
GH04J091297 Enhancer 0.3 FANTOM5 0.3 +27.7 27714 0 ZSCAN4 ENSG00000249049 piR-31937-160
GH04J091318 Enhancer 0.2 FANTOM5 0.4 +7.1 7136 0.2 ENSG00000249049 piR-31937-160 GRID2
GH04J091280 Enhancer 0.2 Ensembl 0.3 +44.4 44405 0.2 piR-31937-160 ENSG00000249049
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000249049 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000249049 Gene

Genomic Locations for ENSG00000249049 Gene
chr4:91,319,034-91,325,306
(GRCh38/hg38)
Size:
6,273 bases
Orientation:
Minus strand
chr4:92,240,185-92,246,457
(GRCh37/hg19)
Size:
6,273 bases
Orientation:
Minus strand

Genomic View for ENSG00000249049 Gene

Genes around ENSG00000249049 on UCSC Golden Path with GeneCards custom track
ENSG00000249049 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000249049 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000249049 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000249049 Gene

Proteins for ENSG00000249049 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000249049 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000249049 Gene

Domains & Families for ENSG00000249049 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000249049 Gene

Function for ENSG00000249049 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000249049 Gene

Localization for ENSG00000249049 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000249049 Gene

Pathways & Interactions for ENSG00000249049 Gene

PathCards logo

SuperPathways for ENSG00000249049 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000249049 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000249049 Gene

Drugs & Compounds for ENSG00000249049 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000249049 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000249049 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007C6D89_9606 lncRNA 375 2

Ensembl: ENST00000502368 (view in UCSC) ,

LNCipedia: lnc-SNCA-5:1,

ENSG00000249049 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000249049 Gene

No ASD Table

Relevant External Links for ENSG00000249049 Gene

GeneLoc Exon Structure for
ENSG00000249049

No data available for mRNA/cDNA for ENSG00000249049 Gene

Expression for ENSG00000249049 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000249049 Gene

mRNA expression in normal human tissues for ENSG00000249049 Gene
mRNA expression by GTEx for ENSG00000249049 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000249049 Gene

This gene is overexpressed in Fallopian Tube (x27.3), Cervix - Endocervix (x15.4), and Kidney - Cortex (x4.4).
genes like me logo Genes that share expression patterns with ENSG00000249049: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000249049 Gene

Orthologs for ENSG00000249049 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ENSG00000249049 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia -- 31
  • 99 (a)
 OneToOne
Species where no ortholog for ENSG00000249049 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000249049 Gene

ENSEMBL:
Gene Tree for ENSG00000249049 (if available)
TreeFam:
Gene Tree for ENSG00000249049 (if available)

Paralogs for ENSG00000249049 Gene

No data available for Paralogs for ENSG00000249049 Gene

Variants for ENSG00000249049 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000249049 Gene

Disorders for ENSG00000249049 Gene

Additional Disease Information for ENSG00000249049

Open Targets Platform

No disorders were found for ENSG00000249049 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000249049 Gene

Publications for ENSG00000249049 Gene

No publications were found for ENSG00000249049 Gene.

No data available for Mastermind for ENSG00000249049 Gene

Products for ENSG00000249049 Gene

Sources for ENSG00000249049 Gene