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Aliases for ENSG00000249001 Gene
Subcategory (RNA class) for ENSG00000249001 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for ENSG00000249001 Gene
External Ids for ENSG00000249001 Gene
- Ensembl: ENSG00000249001
Previous GeneCards Identifiers for ENSG00000249001 Gene
- GC04M088489
Summaries for ENSG00000249001 Gene
GeneCards Summary for ENSG00000249001 Gene
ENSG00000249001 is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for ENSG00000249001 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000249001 Gene
Genomics for ENSG00000249001 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for ENSG00000249001 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J087732 | Enhancer | 0.3 | Ensembl | 600.7 | +1.5 | 1455 | 1.8 | SPI1 | ENSG00000249001 DSPP IBSP LOC105377324 piR-32023-174 DMP1 | |
| GH04J087734 | Enhancer | 0.2 | Ensembl | 600.7 | -0.4 | -445 | 0.8 | ENSG00000249001 piR-61532-220 LOC105377324 IBSP DMP1 | ||
| GH04J087657 | Enhancer | 1 | Ensembl ENCODE | 11.4 | +75.2 | 75196 | 3.9 | CREB1 ATF7 ZNF629 ZNF776 PATZ1 ZNF501 ZNF600 ZNF561 SCRT2 ZBTB44 | IBSP ENSG00000249001 ENSG00000200024 DSPP DMP1 piR-51137-086 LOC105377323 | |
| GH04J087864 | Enhancer | 1.3 | FANTOM5 Ensembl ENCODE | 6.7 | -134.8 | -134774 | 8.9 | GATAD2A TEAD4 TFE3 SOX13 NFKBIZ RCOR2 FOXA1 RBFOX2 RXRB IRF2 | SPP1 ENSG00000249001 PKD2 ENSG00000272856 piR-31470-376 piR-50968-096 MEPE | |
| GH04J087654 | Enhancer | 0.3 | Ensembl | 15.3 | +79.3 | 79255 | 1.4 | REST | ENSG00000249001 DSPP ENSG00000200024 DMP1 piR-51137-086 IBSP |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around ENSG00000249001 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for ENSG00000249001 Gene
Genomic Locations for ENSG00000249001 Gene
- chr4:87,542,770-87,733,956
- (GRCh38/hg38)
- Size:
- 191,187 bases
- Orientation:
- Minus strand
- chr4:88,489,187-88,655,108
- (GRCh37/hg19)
- Size:
- 165,922 bases
- Orientation:
- Minus strand
Genomic View for ENSG00000249001 Gene
Genes around ENSG00000249001 on UCSC Golden Path with GeneCards custom track
ENSG00000249001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 4q22.1 by Ensembl
ENSG00000249001 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
No data available for RefSeq DNA sequence for ENSG00000249001 Gene
Proteins for ENSG00000249001 Gene
Post-translational modifications for ENSG00000249001 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000249001
- Origene Custom Protein Services for ENSG00000249001
No data available for DME Specific Peptides for ENSG00000249001 Gene
Domains & Families for ENSG00000249001 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000249001 Gene
Function for ENSG00000249001 Gene
Phenotypes From GWAS Catalog for ENSG00000249001 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for ENSG00000249001
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000249001 Gene
Localization for ENSG00000249001 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000249001 Gene
Transcripts for ENSG00000249001 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000249001 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00005761B8_9606 | lncRNA | 531 | 4 |
Ensembl: ENST00000503993 (view in UCSC) , LncBook: HSALNT0074751, LNCipedia: lnc-SPARCL1-1:1, NONCODE: NONHSAT097321.2, |
| URS000037426F_9606 | lncRNA | 367 | 4 |
Ensembl: ENST00000507894 (view in UCSC) , LncBook: HSALNT0074744, LNCipedia: lnc-SPARCL1-1:3, NONCODE: NONHSAT097319.2, |
| URS000005D191_9606 | lncRNA | 821 | 3 |
Ensembl: ENST00000506480 (view in UCSC) , LNCipedia: lnc-SPARCL1-1:2, NONCODE: NONHSAT097317.2, |
| URS000040C046_9606 | lncRNA | 591 | 3 |
Ensembl: ENST00000506814 (view in UCSC) , LNCipedia: lnc-SPARCL1-1:4, NONCODE: NONHSAT097320.2, |
| URS0000D5B95C_9606 | lncRNA | 2285 | 2 |
LncBook: HSALNT0074740, LNCipedia: lnc-SPARCL1-1:6, |
ENSG00000249001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
CRISPR Products
- Browse CRISPR knockouts for ENSG00000249001
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for ENSG00000249001 Gene
- GeneLoc Exon Structure for
- ENSG00000249001
No data available for mRNA/cDNA for ENSG00000249001 Gene
Expression for ENSG00000249001 Gene
mRNA differential expression in normal tissues according to GTEx for ENSG00000249001 Gene
This gene is overexpressed in Testis (x14.9), Artery - Coronary (x11.2), and Artery - Aorta (x5.0).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000249001 Gene
Orthologs for ENSG00000249001 Gene
No data available for Orthologs for ENSG00000249001 Gene
Paralogs for ENSG00000249001 Gene
No data available for Paralogs for ENSG00000249001 Gene
Variants for ENSG00000249001 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000249001 Gene
Disorders for ENSG00000249001 Gene
Additional Disease Information for ENSG00000249001
No disorders were found for ENSG00000249001 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000249001 Gene
Publications for ENSG00000249001 Gene
No publications were found for ENSG00000249001 Gene.
No data available for Mastermind for ENSG00000249001 Gene
Products for ENSG00000249001 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for ENSG00000249001
- Origene Custom Protein Services for ENSG00000249001
- Browse OriGene Inhibitory RNA Products For ENSG00000249001
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for ENSG00000249001
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For ENSG00000249001
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for ENSG00000249001
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for ENSG00000249001
- Search GeneCopoeia for miRNA 3'UTR Target clone products for ENSG00000249001
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for ENSG00000249001
Sources for ENSG00000249001 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB