Aliases for ENSG00000249001 Gene

Subcategory (RNA class) for ENSG00000249001 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000249001 Gene

  • Novel Transcript 5
  • NONHSAG038386.2 91
  • Lnc-SPARCL1-1 165
  • HSALNG0035715 164
  • AC093895.2 5

External Ids for ENSG00000249001 Gene

Previous GeneCards Identifiers for ENSG00000249001 Gene

  • GC04M088489

Summaries for ENSG00000249001 Gene

GeneCards Summary for ENSG00000249001 Gene

ENSG00000249001 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000249001 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000249001 Gene

Genomics for ENSG00000249001 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000249001 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J087732 Enhancer 0.3 Ensembl 600.7 +1.5 1455 1.8 SPI1 ENSG00000249001 DSPP IBSP LOC105377324 piR-32023-174 DMP1
GH04J087734 Enhancer 0.2 Ensembl 600.7 -0.4 -445 0.8 ENSG00000249001 piR-61532-220 LOC105377324 IBSP DMP1
GH04J087657 Enhancer 1 Ensembl ENCODE 11.4 +75.2 75196 3.9 CREB1 ATF7 ZNF629 ZNF776 PATZ1 ZNF501 ZNF600 ZNF561 SCRT2 ZBTB44 IBSP ENSG00000249001 ENSG00000200024 DSPP DMP1 piR-51137-086 LOC105377323
GH04J087864 Enhancer 1.3 FANTOM5 Ensembl ENCODE 6.7 -134.8 -134774 8.9 GATAD2A TEAD4 TFE3 SOX13 NFKBIZ RCOR2 FOXA1 RBFOX2 RXRB IRF2 SPP1 ENSG00000249001 PKD2 ENSG00000272856 piR-31470-376 piR-50968-096 MEPE
GH04J087654 Enhancer 0.3 Ensembl 15.3 +79.3 79255 1.4 REST ENSG00000249001 DSPP ENSG00000200024 DMP1 piR-51137-086 IBSP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000249001 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000249001 Gene

Genomic Locations for ENSG00000249001 Gene
chr4:87,542,770-87,733,956
(GRCh38/hg38)
Size:
191,187 bases
Orientation:
Minus strand
chr4:88,489,187-88,655,108
(GRCh37/hg19)
Size:
165,922 bases
Orientation:
Minus strand

Genomic View for ENSG00000249001 Gene

Genes around ENSG00000249001 on UCSC Golden Path with GeneCards custom track
ENSG00000249001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000249001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000249001 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000249001 Gene

Proteins for ENSG00000249001 Gene

Post-translational modifications for ENSG00000249001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000249001 Gene

Domains & Families for ENSG00000249001 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000249001 Gene

Function for ENSG00000249001 Gene

Phenotypes From GWAS Catalog for ENSG00000249001 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000249001 Gene

Localization for ENSG00000249001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000249001 Gene

Pathways & Interactions for ENSG00000249001 Gene

PathCards logo

SuperPathways for ENSG00000249001 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000249001 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000249001 Gene

Drugs & Compounds for ENSG00000249001 Gene

No Compound Related Data Available

Transcripts for ENSG00000249001 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000249001 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005761B8_9606 lncRNA 531 4

Ensembl: ENST00000503993 (view in UCSC) ,

LncBook: HSALNT0074751,

LNCipedia: lnc-SPARCL1-1:1,

NONCODE: NONHSAT097321.2,

URS000037426F_9606 lncRNA 367 4

Ensembl: ENST00000507894 (view in UCSC) ,

LncBook: HSALNT0074744,

LNCipedia: lnc-SPARCL1-1:3,

NONCODE: NONHSAT097319.2,

URS000005D191_9606 lncRNA 821 3

Ensembl: ENST00000506480 (view in UCSC) ,

LNCipedia: lnc-SPARCL1-1:2,

NONCODE: NONHSAT097317.2,

URS000040C046_9606 lncRNA 591 3

Ensembl: ENST00000506814 (view in UCSC) ,

LNCipedia: lnc-SPARCL1-1:4,

NONCODE: NONHSAT097320.2,

URS0000D5B95C_9606 lncRNA 2285 2

LncBook: HSALNT0074740,

LNCipedia: lnc-SPARCL1-1:6,

ENSG00000249001 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000249001 Gene

No ASD Table

Relevant External Links for ENSG00000249001 Gene

GeneLoc Exon Structure for
ENSG00000249001

No data available for mRNA/cDNA for ENSG00000249001 Gene

Expression for ENSG00000249001 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000249001 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000249001 Gene

This gene is overexpressed in Testis (x14.9), Artery - Coronary (x11.2), and Artery - Aorta (x5.0).
genes like me logo Genes that share expression patterns with ENSG00000249001: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000249001 Gene

Orthologs for ENSG00000249001 Gene

Evolution for ENSG00000249001 Gene

ENSEMBL:
Gene Tree for ENSG00000249001 (if available)
TreeFam:
Gene Tree for ENSG00000249001 (if available)

No data available for Orthologs for ENSG00000249001 Gene

Paralogs for ENSG00000249001 Gene

No data available for Paralogs for ENSG00000249001 Gene

Variants for ENSG00000249001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000249001 Gene

Disorders for ENSG00000249001 Gene

Additional Disease Information for ENSG00000249001

No disorders were found for ENSG00000249001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000249001 Gene

Publications for ENSG00000249001 Gene

No publications were found for ENSG00000249001 Gene.

No data available for Mastermind for ENSG00000249001 Gene

Products for ENSG00000249001 Gene

Sources for ENSG00000249001 Gene