Aliases for ENSG00000248996 Gene

Subcategory (RNA class) for ENSG00000248996 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for ENSG00000248996 Gene

  • Novel Transcript 5
  • HSALNG0046936 169
  • NONHSAG042360 94
  • AC145098.1 5

External Ids for ENSG00000248996 Gene

Previous GeneCards Identifiers for ENSG00000248996 Gene

  • GC05P176921

Summaries for ENSG00000248996 Gene

GeneCards Summary for ENSG00000248996 Gene

ENSG00000248996 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248996 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248996 Gene

Genomics for ENSG00000248996 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000248996 Gene

Promoters and enhancers for ENSG00000248996 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J177492 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.6 580 6.8 ZNF785 ZBTB40 SP1 CTCF RBPJ SMARCE1 POLR2A MYC CC2D1A NFYC PDLIM7 ENSG00000248996 NSD1 ZNF346 ENSG00000246596 FAM193B LMAN2 PHYKPL HNRNPAB TMED9
GH05J177491 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.6 -3.4 -3430 0.3 CTCF RBPJ L3MBTL2 DACH1 SP1 KLF14 ZBTB33 GLIS2 ARID2 REST NSD1 ZNF346 ENSG00000247679 ZNF346-IT1 ENSG00000246596 ENSG00000248996 lnc-DBN1-3 PDLIM7 lnc-PDLIM7-3
GH05J177499 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +5.7 5664 2.5 CTCF ZBTB6 CC2D1A HLF L3MBTL2 RAD21 CREM IKZF1 GLIS2 ZIC2 PDLIM7 ENSG00000248996 lnc-DDX41-1 DOK3
GH05J177489 Enhancer 0.6 Ensembl dbSUPER 0.6 -4.7 -4694 0.6 ETV6 ZFHX2 ZNF366 HIC1 ENSG00000248996 lnc-DBN1-3 PDLIM7
GH05J177502 Enhancer 0.7 ENCODE 0.4 +7.5 7486 0.6 SP1 NKRF MLLT1 PRDM1 CREM RELA IKZF1 BACH1 TRIM22 IKZF2 PDLIM7 ENSG00000248996 DOK3 lnc-DDX41-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248996 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000248996 Gene

Genomic Locations for ENSG00000248996 Gene
chr5:177,494,995-177,503,647
(GRCh38/hg38)
Size:
8,653 bases
Orientation:
Plus strand
chr5:176,921,996-176,930,648
(GRCh37/hg19)
Size:
8,653 bases
Orientation:
Plus strand

Genomic View for ENSG00000248996 Gene

Genes around ENSG00000248996 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000248996 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248996 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248996 Gene

Proteins for ENSG00000248996 Gene

Post-translational modifications for ENSG00000248996 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248996 Gene

Domains & Families for ENSG00000248996 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248996 Gene

Function for ENSG00000248996 Gene

Phenotypes From GWAS Catalog for ENSG00000248996 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248996 Gene

Localization for ENSG00000248996 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248996 Gene

Pathways & Interactions for ENSG00000248996 Gene

PathCards logo

SuperPathways for ENSG00000248996 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000248996 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000248996 Gene

Drugs & Compounds for ENSG00000248996 Gene

No Compound Related Data Available

Transcripts for ENSG00000248996 Gene

mRNA/cDNA for ENSG00000248996 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) NONCODE transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248996 Gene

No ASD Table

Relevant External Links for ENSG00000248996 Gene

GeneLoc Exon Structure for
ENSG00000248996

Expression for ENSG00000248996 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000248996 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000248996 Gene

This gene is overexpressed in Whole Blood (x35.4).
genes like me logo Genes that share expression patterns with ENSG00000248996: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248996 Gene

Orthologs for ENSG00000248996 Gene

Evolution for ENSG00000248996 Gene

ENSEMBL:
Gene Tree for ENSG00000248996 (if available)
TreeFam:
Gene Tree for ENSG00000248996 (if available)

No data available for Orthologs for ENSG00000248996 Gene

Paralogs for ENSG00000248996 Gene

No data available for Paralogs for ENSG00000248996 Gene

Variants for ENSG00000248996 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248996 Gene

Disorders for ENSG00000248996 Gene

No disorders were found for ENSG00000248996 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000248996 Gene

Publications for ENSG00000248996 Gene

No publications were found for ENSG00000248996 Gene.

No data available for External Links for ENSG00000248996 Gene

Products for ENSG00000248996 Gene

Sources for ENSG00000248996 Gene