Aliases for ENSG00000248954 Gene

Subcategory (RNA class) for ENSG00000248954 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000248954 Gene

  • Novel Transcript 5
  • HSALNG0117221 167
  • NONHSAG022148 92
  • AC027801.1 5
  • Lnc-KAT7-3 168

External Ids for ENSG00000248954 Gene

Previous GeneCards Identifiers for ENSG00000248954 Gene

  • GC17P047964

Summaries for ENSG00000248954 Gene

GeneCards Summary for ENSG00000248954 Gene

ENSG00000248954 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248954 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248954 Gene

Genomics for ENSG00000248954 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000248954 Gene

Promoters and enhancers for ENSG00000248954 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049885 Enhancer 1.3 FANTOM5 Ensembl ENCODE 500.7 +1.2 1215 6.1 EP300 ZNF217 POLR2G NCOR1 TEAD4 ZIC2 KDM6A CLOCK CHD1 ZBTB7A ENSG00000248954 ENSG00000262837 FLJ45513 DLX3 TAC4 DLX4 ENSG00000248172 RNU6-1313P LUC7L3 UBE2Z
GH17J049735 Promoter/Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 4.7 -144.4 -144381 15.6 ZNF300 USF1 SP1 JUND PHB2 ZNF10 ZBTB5 EP300 ZIC2 ZBTB11 LUC7L3 NXPH3 SPOP KAT7 ENSG00000230532 SLC35B1 ENSG00000250286 FLJ45513 TAC4 ENSG00000249406
GH17J049894 Enhancer 0.7 Ensembl ENCODE 5.8 +7.4 7387 0.9 ZFX MYC ELF1 NFIB KLF1 ZNF687 ZNF384 POLR2A ZBTB33 ZNF600 FLJ45513 DLX3 ENSG00000248172 TAC4 SLC35B1 ENSG00000248954 MG828543
GH17J049897 Enhancer 0.3 Ensembl ENCODE 5.7 +9.5 9516 0.2 DLX3 ENSG00000248172 TAC4 FLJ45513 SLC35B1 ENSG00000248954 MG828543
GH17J049880 Enhancer 1 ENCODE CraniofacialAtlas 0.4 -7.0 -6955 1.2 ZNF217 CTCF NRF1 TEAD4 GABPA SAP30 REST ZBTB25 TGIF2 RAD21 ENSG00000248954 RF00017-2440
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248954 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000248954 Gene

Genomic Locations for ENSG00000248954 Gene
chr17:49,887,598-49,900,893
(GRCh38/hg38)
Size:
13,296 bases
Orientation:
Plus strand
chr17:47,964,961-47,978,257
(GRCh37/hg19)
Size:
13,297 bases
Orientation:
Plus strand

Genomic View for ENSG00000248954 Gene

Genes around ENSG00000248954 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000248954 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248954 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248954 Gene

Proteins for ENSG00000248954 Gene

Post-translational modifications for ENSG00000248954 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248954 Gene

Domains & Families for ENSG00000248954 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248954 Gene

Function for ENSG00000248954 Gene

Phenotypes From GWAS Catalog for ENSG00000248954 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248954 Gene

Localization for ENSG00000248954 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248954 Gene

Pathways & Interactions for ENSG00000248954 Gene

PathCards logo

SuperPathways for ENSG00000248954 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000248954 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248954 Gene

Drugs & Compounds for ENSG00000248954 Gene

No Compound Related Data Available

Transcripts for ENSG00000248954 Gene

mRNA/cDNA for ENSG00000248954 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248954 Gene

No ASD Table

Relevant External Links for ENSG00000248954 Gene

GeneLoc Exon Structure for
ENSG00000248954

Expression for ENSG00000248954 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248954 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000248954 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x8.2), Skin - Not Sun Exposed (Suprapubic) (x7.4), Vagina (x4.9), and Esophagus - Mucosa (x4.6).
genes like me logo Genes that share expression patterns with ENSG00000248954: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248954 Gene

Orthologs for ENSG00000248954 Gene

Evolution for ENSG00000248954 Gene

ENSEMBL:
Gene Tree for ENSG00000248954 (if available)
TreeFam:
Gene Tree for ENSG00000248954 (if available)

No data available for Orthologs for ENSG00000248954 Gene

Paralogs for ENSG00000248954 Gene

No data available for Paralogs for ENSG00000248954 Gene

Variants for ENSG00000248954 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248954 Gene

Disorders for ENSG00000248954 Gene

No disorders were found for ENSG00000248954 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000248954 Gene

Publications for ENSG00000248954 Gene

No publications were found for ENSG00000248954 Gene.

No data available for Mastermind for ENSG00000248954 Gene

Products for ENSG00000248954 Gene

Sources for ENSG00000248954 Gene