Aliases for ENSG00000248774 Gene

Data sources for ENSG00000248774 Gene:

Subcategory (RNA class) for ENSG00000248774 Gene

lncRNA

Aliases for ENSG00000248774 Gene

External Ids for ENSG00000248774 Gene

Previous GeneCards Identifiers for ENSG00000248774 Gene

  • GC04M174243

Summaries for ENSG00000248774 Gene

GeneCards Summary for ENSG00000248774 Gene

ENSG00000248774 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248774 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248774 Gene

Genomics for ENSG00000248774 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000248774 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J173366 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 13.6 -40.8 -40849 7.3 TBP ZBTB10 MXD4 FEZF1 SIX5 MNT IKZF1 SMAD5 ETS1 MBD2 HMGB2 SAP30 SAP30-DT ENSG00000248774 SCRG1 RNU6-1096P CEP44 FBXO8 hsa-miR-5095-383 lnc-SAP30-8
GH04J173254 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.8 +73.0 72961 4.9 CTCF REST ZNF740 VEZF1 TRIM22 ZEB2 TAL1 SMC3 RAD21 ZFP91 ENSG00000248774 SCRG1 lnc-HMGB2-2 lnc-HMGB2-8 HMGB2 GALNT7
GH04J173008 Enhancer 0.7 Ensembl 10.3 +320.6 320594 1.8 ZBTB10 ZNF316 NFE2 ZBTB21 GATA2 TRIM28 ZNF629 ATF3 ZNF692 TRIM24 lnc-HMGB2-11 ENSG00000248774 piR-36423 GALNT7
GH04J173365 Enhancer 0.4 Ensembl 13.6 -36.4 -36406 1 MEIS2 PKNOX1 MZF1 ZNF600 HMGB2 ENSG00000248774 SCRG1 RNU6-1096P SAP30 lnc-SAP30-8 SAP30-DT
GH04J173360 Enhancer 0.3 Ensembl 13.6 -31.2 -31206 0.2 CTCF RAD21 lnc-SAP30-8 HMGB2 ENSG00000248774 SCRG1 RNU6-1096P SAP30 SAP30-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248774 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000248774 Gene

Latest Assembly
chr4:173,322,205-173,329,695
(GRCh38/hg38)
Size:
7,491 bases
Orientation:
Minus strand

Previous Assembly
chr4:174,243,357-174,250,845
(GRCh37/hg19 by Ensembl)
Size:
7,489 bases
Orientation:
Minus strand

Genomic View for ENSG00000248774 Gene

Genes around ENSG00000248774 on UCSC Golden Path with GeneCards custom track
ENSG00000248774 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000248774 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248774 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248774 Gene

Proteins for ENSG00000248774 Gene

Post-translational modifications for ENSG00000248774 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248774 Gene

Domains & Families for ENSG00000248774 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248774 Gene

Function for ENSG00000248774 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248774 Gene

Localization for ENSG00000248774 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248774 Gene

Pathways & Interactions for ENSG00000248774 Gene

PathCards logo

SuperPathways for ENSG00000248774 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000248774 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248774 Gene

Drugs & Compounds for ENSG00000248774 Gene

No Compound Related Data Available

Transcripts for ENSG00000248774 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000248774 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000688FD_9606 lncRNA 524 4

Ensembl: ENST00000507803 (view in UCSC) ,

LncBook: HSALNT0080867,

LNCipedia: lnc-HMGB2-1:1,

NONCODE: NONHSAT099231.2,

URS00009BD0CC_9606 lncRNA 521 2

LncBook: HSALNT0080868,

NONCODE: NONHSAT200692.1,

ENSG00000248774 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248774 Gene

No ASD Table

Relevant External Links for ENSG00000248774 Gene

GeneLoc Exon Structure for
ENSG00000248774

No data available for mRNA/cDNA for ENSG00000248774 Gene

Expression for ENSG00000248774 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248774 Gene

genes like me logo Genes that share expression patterns with ENSG00000248774: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248774 Gene

Orthologs for ENSG00000248774 Gene

Evolution for ENSG00000248774 Gene

ENSEMBL:
Gene Tree for ENSG00000248774 (if available)
TreeFam:
Gene Tree for ENSG00000248774 (if available)

No data available for Orthologs for ENSG00000248774 Gene

Paralogs for ENSG00000248774 Gene

No data available for Paralogs for ENSG00000248774 Gene

Variants for ENSG00000248774 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248774 Gene

Disorders for ENSG00000248774 Gene

Additional Disease Information for ENSG00000248774

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000248774 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000248774 Gene

Publications for ENSG00000248774 Gene

No publications were found for ENSG00000248774 Gene.

No data available for Mastermind for ENSG00000248774 Gene

Products for ENSG00000248774 Gene

Sources for ENSG00000248774 Gene