Aliases for ENSG00000248753 Gene

Subcategory (RNA class) for ENSG00000248753 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000248753 Gene

  • Novel Transcript 5
  • Lnc-CATSPER3-1 168
  • HSALNG0045017 167
  • NONHSAG041603 92
  • AC008406.2 5

External Ids for ENSG00000248753 Gene

Previous GeneCards Identifiers for ENSG00000248753 Gene

  • GC05P134456

Summaries for ENSG00000248753 Gene

GeneCards Summary for ENSG00000248753 Gene

ENSG00000248753 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248753 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248753 Gene

Genomics for ENSG00000248753 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000248753 Gene

Promoters and enhancers for ENSG00000248753 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J135132 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.3 16274 12.4 NRF1 POLR2G NCOR1 JUND PHB2 FOS ZBTB5 ZIC2 ZNF263 ZBTB11 SMAD5 PITX1 DDX46 CATSPER3 DCANP1 ENSG00000248482 LOC105379188 ENSG00000248753 piR-56037-012 C5orf66
GH05J135115 Enhancer 0.8 dbSUPER 0.7 -4.4 -4381 1.2 ZBTB5 ZIC2 AFF1 HES1 TOE1 NFRKB MIER1 NCOR1 FOXA2 TRIM24 ENSG00000248753 piR-56341-188 C5orf66
GH05J135126 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +7.7 7675 3.6 POLR2G JUND FOS EP300 TEAD1 OSR2 FOXA2 ZBTB17 SMARCC1 FOSL2 ENSG00000248482 LOC105379188 ENSG00000248753 C5orf66
GH05J135111 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -8.4 -8425 2.6 ZIC2 FOS CEBPB STAT3 USF2 HLF ESRRA PRDM10 ZBTB33 ENSG00000248753 piR-56341-188 C5orf66
GH05J135106 Enhancer 0.7 Ensembl dbSUPER 0.4 -14.3 -14325 3.6 EP300 NFIC FOS SPI1 ZNF112 PRDM10 ZNF652 POLR2A MYC STAT3 C5orf24 ENSG00000248753 piR-56341-188 C5orf66
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248753 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000248753 Gene

Genomic Locations for ENSG00000248753 Gene
chr5:135,120,526-135,139,681
(GRCh38/hg38)
Size:
19,156 bases
Orientation:
Plus strand
chr5:134,456,216-134,475,371
(GRCh37/hg19)
Size:
19,156 bases
Orientation:
Plus strand

Genomic View for ENSG00000248753 Gene

Genes around ENSG00000248753 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000248753 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248753 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248753 Gene

Proteins for ENSG00000248753 Gene

Post-translational modifications for ENSG00000248753 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248753 Gene

Domains & Families for ENSG00000248753 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248753 Gene

Function for ENSG00000248753 Gene

Phenotypes From GWAS Catalog for ENSG00000248753 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248753 Gene

Localization for ENSG00000248753 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248753 Gene

Pathways & Interactions for ENSG00000248753 Gene

PathCards logo

SuperPathways for ENSG00000248753 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000248753 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248753 Gene

Drugs & Compounds for ENSG00000248753 Gene

No Compound Related Data Available

Transcripts for ENSG00000248753 Gene

mRNA/cDNA for ENSG00000248753 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248753 Gene

No ASD Table

Relevant External Links for ENSG00000248753 Gene

GeneLoc Exon Structure for
ENSG00000248753

Expression for ENSG00000248753 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248753 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000248753 Gene

This gene is overexpressed in Testis (x33.8), Esophagus - Mucosa (x10.5), and Vagina (x8.7).
genes like me logo Genes that share expression patterns with ENSG00000248753: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248753 Gene

Orthologs for ENSG00000248753 Gene

Evolution for ENSG00000248753 Gene

ENSEMBL:
Gene Tree for ENSG00000248753 (if available)
TreeFam:
Gene Tree for ENSG00000248753 (if available)

No data available for Orthologs for ENSG00000248753 Gene

Paralogs for ENSG00000248753 Gene

No data available for Paralogs for ENSG00000248753 Gene

Variants for ENSG00000248753 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248753 Gene

Disorders for ENSG00000248753 Gene

No disorders were found for ENSG00000248753 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000248753 Gene

Publications for ENSG00000248753 Gene

No publications were found for ENSG00000248753 Gene.

No data available for Mastermind for ENSG00000248753 Gene

Products for ENSG00000248753 Gene

Sources for ENSG00000248753 Gene