Aliases for ENSG00000248551 Gene

Data sources for ENSG00000248551 Gene:

Subcategory (RNA class) for ENSG00000248551 Gene

lncRNA

Aliases for ENSG00000248551 Gene

External Ids for ENSG00000248551 Gene

Previous GeneCards Identifiers for ENSG00000248551 Gene

  • GC04M176267

Summaries for ENSG00000248551 Gene

GeneCards Summary for ENSG00000248551 Gene

ENSG00000248551 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248551 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248551 Gene

Genomics for ENSG00000248551 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000248551 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J175443 Enhancer 0.7 Ensembl ENCODE 0.4 +6.7 6693 2.4 CUX1 CTBP1 CTCF SMARCE1 FOXA1 DPF2 ZNF687 RAD21 ZNF579 ZNF592 ENSG00000249945 ENSG00000248551 lnc-GPM6A-2 RF00017-4458 GPM6A ADAM29
GH04J175417 Enhancer 1 FANTOM5 Ensembl ENCODE 0.3 +31.3 31273 5.2 CEBPB MBD2 CUX1 EP300 CTBP1 STAT3 JUND FOXA1 DPF2 NCOA3 lnc-GPM6A-2 ENSG00000248551 RF00017-4458 lnc-ADAM29-1 GPM6A ADAM29
GH04J175458 Enhancer 0.7 Ensembl ENCODE 0.4 -6.5 -6546 0.4 ZNF217 MBD2 CTBP1 SMARCE1 FOXA1 DPF2 NCOA3 KLF4 piR-37567-160 ENSG00000248551 ENSG00000249945 ADAM29 GPM6A
GH04J175435 Enhancer 0.3 Ensembl 0.4 +15.9 15873 0.4 GATA2 CHD2 ENSG00000248551 lnc-GPM6A-2 RF00017-4458 GPM6A ADAM29
GH04J175381 Enhancer 0.5 Ensembl 0.2 +70.4 70373 0.2 ZNF217 CTBP1 SMARCE1 DPF2 CREB1 ZHX2 ATF7 SREBF1 RF00017-4458 lnc-ADAM29-1 ENSG00000248551 ADAM29 GPM6A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248551 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000248551 Gene

Latest Assembly
chr4:175,345,548-175,451,474
(GRCh38/hg38)
Size:
105,927 bases
Orientation:
Minus strand

Previous Assembly
chr4:176,267,509-176,324,261
(GRCh37/hg19 by Ensembl)
Size:
56,753 bases
Orientation:
Minus strand

Genomic View for ENSG00000248551 Gene

Genes around ENSG00000248551 on UCSC Golden Path with GeneCards custom track
ENSG00000248551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000248551 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248551 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248551 Gene

Proteins for ENSG00000248551 Gene

Post-translational modifications for ENSG00000248551 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248551 Gene

Domains & Families for ENSG00000248551 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248551 Gene

Function for ENSG00000248551 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248551 Gene

Localization for ENSG00000248551 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248551 Gene

Pathways & Interactions for ENSG00000248551 Gene

PathCards logo

SuperPathways for ENSG00000248551 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000248551 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248551 Gene

Drugs & Compounds for ENSG00000248551 Gene

No Compound Related Data Available

Transcripts for ENSG00000248551 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000248551 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003E98FF_9606 lncRNA 905 3

Ensembl: ENST00000502661 (view in UCSC) ,

LNCipedia: lnc-GPM6A-3:1,

NONCODE: NONHSAT099339.2,

URS0001BEFF47_9606 lncRNA 1987 1

LncBook: HSALNT0081200,

URS0001BDABF7_9606 lncRNA 1957 1

LncBook: HSALNT0081201,

URS0001BCA957_9606 lncRNA 1808 1

LncBook: HSALNT0081199,

URS0001BE1B3F_9606 lncRNA 1481 1

LncBook: HSALNT0081186,

ENSG00000248551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248551 Gene

No ASD Table

Relevant External Links for ENSG00000248551 Gene

GeneLoc Exon Structure for
ENSG00000248551

No data available for mRNA/cDNA for ENSG00000248551 Gene

Expression for ENSG00000248551 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248551 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000248551 Gene

This gene is overexpressed in Testis (x16.3), Artery - Tibial (x11.3), and Lung (x7.5).
genes like me logo Genes that share expression patterns with ENSG00000248551: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248551 Gene

Orthologs for ENSG00000248551 Gene

Evolution for ENSG00000248551 Gene

ENSEMBL:
Gene Tree for ENSG00000248551 (if available)
TreeFam:
Gene Tree for ENSG00000248551 (if available)

No data available for Orthologs for ENSG00000248551 Gene

Paralogs for ENSG00000248551 Gene

No data available for Paralogs for ENSG00000248551 Gene

Variants for ENSG00000248551 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248551 Gene

Disorders for ENSG00000248551 Gene

Additional Disease Information for ENSG00000248551

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000248551 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000248551 Gene

Publications for ENSG00000248551 Gene

No publications were found for ENSG00000248551 Gene.

No data available for Mastermind for ENSG00000248551 Gene

Products for ENSG00000248551 Gene

Sources for ENSG00000248551 Gene