Aliases for ENSG00000248416 Gene

Subcategory (RNA class) for ENSG00000248416 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000248416 Gene

  • Novel Transcript 5
  • NONHSAG037222 92
  • Lnc-SLC49A3-1 168
  • HSALNG0032177 167
  • AC107464.2 5

External Ids for ENSG00000248416 Gene

Summaries for ENSG00000248416 Gene

GeneCards Summary for ENSG00000248416 Gene

ENSG00000248416 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248416 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248416 Gene

Genomics for ENSG00000248416 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000248416 Gene

Promoters and enhancers for ENSG00000248416 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J000722 Enhancer 0.9 Ensembl ENCODE dbSUPER 500.7 +0.2 187 1.7 TEAD1 NR2F2 SAP130 BCL6 ZNF18 RAD21 TFAP4 AGO2 SOX5 SP5 ENSG00000248416 PCGF3 lnc-SLC49A3-2 lnc-MYL5-2
GH04J000765 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.9 -42.3 -42264 2.6 POLR2G POLR2A ZNF423 ZEB1 ZNF341 ZNF282 ZNF316 MAFF MYNN TRIM28 ENSG00000233799 PCGF3 ENSG00000288380 UVSSA PIGG ENSG00000272588 ENSG00000281016 ZNF718 ENSG00000248416 IDUA
GH04J000610 Enhancer 0.9 Ensembl ENCODE 11.2 +113.2 113233 1.6 RFX1 CUX1 CTBP1 ZNF341 SIN3A CTCF FOS CEBPB POLR2A JUN SLC49A3 MYL5 PCGF3 ENSG00000248416 ATP5ME piR-56759-415 PDE6B ENSG00000283183 PDE6B-AS1
GH04J000914 Promoter 0.7 Ensembl 11 -191.5 -191467 1.4 SPI1 IKZF1 HDGF NFIC IKZF2 EED RUNX3 lnc-DGKQ-2 DGKQ PCGF3 ENSG00000248416 piR-52096 GAK
GH04J000913 Enhancer 0.2 Ensembl 11 -189.2 -189167 0.8 ENSG00000248416 PCGF3 SLC26A1 DGKQ lnc-DGKQ-2 piR-52096 GAK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248416 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000248416 Gene

Genomic Locations for ENSG00000248416 Gene
chr4:722,275-724,034
(GRCh38/hg38)
Size:
1,760 bases
Orientation:
Minus strand
chr4:716,064-717,823
(GRCh37/hg19)
Size:
1,760 bases
Orientation:
Minus strand

Genomic View for ENSG00000248416 Gene

Genes around ENSG00000248416 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000248416 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248416 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248416 Gene

Proteins for ENSG00000248416 Gene

Post-translational modifications for ENSG00000248416 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248416 Gene

Domains & Families for ENSG00000248416 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248416 Gene

Function for ENSG00000248416 Gene

Phenotypes From GWAS Catalog for ENSG00000248416 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248416 Gene

Localization for ENSG00000248416 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248416 Gene

Pathways & Interactions for ENSG00000248416 Gene

PathCards logo

SuperPathways for ENSG00000248416 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000248416 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248416 Gene

Drugs & Compounds for ENSG00000248416 Gene

No Compound Related Data Available

Transcripts for ENSG00000248416 Gene

mRNA/cDNA for ENSG00000248416 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248416 Gene

No ASD Table

Relevant External Links for ENSG00000248416 Gene

GeneLoc Exon Structure for
ENSG00000248416

Expression for ENSG00000248416 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248416 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000248416 Gene

This gene is overexpressed in Testis (x10.3).
genes like me logo Genes that share expression patterns with ENSG00000248416: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248416 Gene

Orthologs for ENSG00000248416 Gene

Evolution for ENSG00000248416 Gene

ENSEMBL:
Gene Tree for ENSG00000248416 (if available)
TreeFam:
Gene Tree for ENSG00000248416 (if available)

No data available for Orthologs for ENSG00000248416 Gene

Paralogs for ENSG00000248416 Gene

No data available for Paralogs for ENSG00000248416 Gene

Variants for ENSG00000248416 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248416 Gene

Disorders for ENSG00000248416 Gene

No disorders were found for ENSG00000248416 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000248416 Gene

Publications for ENSG00000248416 Gene

No publications were found for ENSG00000248416 Gene.

No data available for Mastermind for ENSG00000248416 Gene

Products for ENSG00000248416 Gene

Sources for ENSG00000248416 Gene