Aliases for ENSG00000248240 Gene

Subcategory (RNA class) for ENSG00000248240 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000248240 Gene

  • Novel Transcript 5
  • HSALNG0041516 167
  • NONHSAG040318 92
  • AC114956.1 5
  • Lnc-NNT-2 168

External Ids for ENSG00000248240 Gene

Summaries for ENSG00000248240 Gene

GeneCards Summary for ENSG00000248240 Gene

ENSG00000248240 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000248240 Gene

Additional gene information for ENSG00000248240 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000248240 Gene

Genomics for ENSG00000248240 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000248240 Gene

Promoters and enhancers for ENSG00000248240 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043513 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 509.2 -0.5 -474 3.2 FOXK2 ZBTB40 ZNF217 SIN3A NRF1 POLR2G GTF2E2 PHF8 ZNF639 ZNF10 ENSG00000248240 C5orf34 lnc-PAIP1-2 NNT ENSG00000249492 ZNF131 C5orf34-AS1 ENSG00000248554 piR-54764-507
GH05J043553 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 16.6 +40.8 40826 4.6 HNRNPK ZBTB40 EP300 CTCF SIN3A TCF12 NRF1 MYC USF1 POLR2G RF00017-4605 PAIP1 EEF1A1P19 NNT ZNF131 RPL29P12 FGF10-AS1 C5orf34 ENSG00000249492 ENSG00000215068
GH05J043033 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.4 -476.2 -476247 11.4 ZBTB40 CTCF ZSCAN5C SIN3A NRF1 TCF12 POLR2G GTF2E2 PHB2 ZFX ZNF131 ENSG00000249492 AMD1P3 ENSG00000248240 EEF1A1P19 ANXA2R RPL29P12 ENSG00000215068 ENSG00000272382 PAIP1
GH05J043015 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 -496.3 -496324 6.6 ZBTB40 ZNF217 CTCF ZSCAN5C SIN3A TCF12 POLR2G SP1 RBAK FOS ENSG00000251131 LOC105374748 piR-35544 piR-51211 ANXA2R ZNF131 ENSG00000215068 ENSG00000248240 ENSG00000249492 TMEM267
GH05J043482 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas 8.6 -30.4 -30375 5.8 HNRNPK ZBTB40 ZNF217 CTCF SIN3A NRF1 TCF12 MYC POLR2G GTF2E2 TMEM267 ENSG00000249492 lnc-TMEM267-1 ZNF131 EEF1A1P19 RPL29P12 FGF10-AS1 C5orf34 NNT CCL28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248240 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000248240 Gene

Genomic Locations for ENSG00000248240 Gene
chr5:43,515,274-43,525,310
(GRCh38/hg38)
Size:
10,037 bases
Orientation:
Plus strand
chr5:43,515,376-43,525,412
(GRCh37/hg19)
Size:
10,037 bases
Orientation:
Plus strand

Genomic View for ENSG00000248240 Gene

Genes around ENSG00000248240 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000248240 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248240 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248240 Gene

Proteins for ENSG00000248240 Gene

Post-translational modifications for ENSG00000248240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248240 Gene

Domains & Families for ENSG00000248240 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248240 Gene

Function for ENSG00000248240 Gene

Phenotypes From GWAS Catalog for ENSG00000248240 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248240 Gene

Localization for ENSG00000248240 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248240 Gene

Pathways & Interactions for ENSG00000248240 Gene

PathCards logo

SuperPathways for ENSG00000248240 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000248240 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248240 Gene

Drugs & Compounds for ENSG00000248240 Gene

No Compound Related Data Available

Transcripts for ENSG00000248240 Gene

mRNA/cDNA for ENSG00000248240 Gene

10 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
5 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248240 Gene

No ASD Table

Relevant External Links for ENSG00000248240 Gene

GeneLoc Exon Structure for
ENSG00000248240

Expression for ENSG00000248240 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248240 Gene

genes like me logo Genes that share expression patterns with ENSG00000248240: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248240 Gene

Orthologs for ENSG00000248240 Gene

Evolution for ENSG00000248240 Gene

ENSEMBL:
Gene Tree for ENSG00000248240 (if available)
TreeFam:
Gene Tree for ENSG00000248240 (if available)

No data available for Orthologs for ENSG00000248240 Gene

Paralogs for ENSG00000248240 Gene

No data available for Paralogs for ENSG00000248240 Gene

Variants for ENSG00000248240 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248240 Gene

Disorders for ENSG00000248240 Gene

No disorders were found for ENSG00000248240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000248240 Gene

Publications for ENSG00000248240 Gene

No publications were found for ENSG00000248240 Gene.

No data available for Mastermind for ENSG00000248240 Gene

Products for ENSG00000248240 Gene

Sources for ENSG00000248240 Gene