Aliases for ENSG00000248240 Gene

Data sources for ENSG00000248240 Gene:

RNA type for ENSG00000248240 Gene

lncRNA

Aliases for ENSG00000248240 Gene

External Ids for ENSG00000248240 Gene

Summaries for ENSG00000248240 Gene

GeneCards Summary for ENSG00000248240 Gene

ENSG00000248240 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000248240 Gene

Additional gene information for ENSG00000248240 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000248240 Gene

Genomics for ENSG00000248240 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000248240 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043513 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 259.2 -0.5 -473 3.2 MYC ZNF600 IKZF1 ZNF592 ATF2 POLR2A ZNF10 BRCA1 ZIC2 YY1 ENSG00000248240 C5orf34 lnc-PAIP1-2 ZNF131 NNT RPL29P12 EEF1A1P19 ENSG00000249492 piR-54764-507 C5orf34-AS1
GH05J043553 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 16.6 +40.8 40827 4.6 IKZF1 MYC ZNF600 ZNF580 ZNF592 POLR2A BRCA1 NFIC ZBTB10 NONO PAIP1 RF00017-4151 NNT ENSG00000248240 C5orf34 EEF1A1P19 NNT-AS1 RPL29P12 ENSG00000249492 FGF10-AS1
GH05J043033 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.4 -476.2 -476218 11.5 BCLAF1 ZNF207 MYC ZNF654 NCOR1 IKZF1 ZNF600 ZNF580 ZNF592 ZMYM3 ZNF131 LOC153684 ENSG00000249492 TMEM267 ENSG00000248240 EEF1A1P19 ANXA2R RPL29P12 PAIP1 ENSG00000272382
GH05J043015 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 -496.3 -496323 6.6 BCLAF1 SP1 ZNF207 ZNF600 ZNF580 ZMYM3 POLR2A CEBPA ZNF10 BRCA1 ENSG00000251131 ENSG00000272382 HSALNG0041488 LOC105374748 piR-35544 piR-51211 ZNF131 ANXA2R TMEM267 LOC153684
GH05J043482 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 8.6 -30.4 -30374 5.8 BCLAF1 ZNF207 ZNF654 MYC ZNF600 ZNF580 ZNF592 POLR2A CEBPA ZNF10 TMEM267 ENSG00000249492 C5orf34-AS1 lnc-TMEM267-1 ZNF131 EEF1A1P19 RPL29P12 C5orf34 NNT CCL28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248240 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000248240 Gene

Latest Assembly
chr5:43,515,273-43,525,310
(GRCh38/hg38)
Size:
10,038 bases
Orientation:
Plus strand

Previous Assembly
chr5:43,515,376-43,525,412
(GRCh37/hg19 by Ensembl)
Size:
10,037 bases
Orientation:
Plus strand

Genomic View for ENSG00000248240 Gene

Genes around ENSG00000248240 on UCSC Golden Path with GeneCards custom track
ENSG00000248240 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000248240 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248240 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248240 Gene

Proteins for ENSG00000248240 Gene

Post-translational modifications for ENSG00000248240 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248240 Gene

Domains & Families for ENSG00000248240 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248240 Gene

Function for ENSG00000248240 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248240 Gene

Localization for ENSG00000248240 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248240 Gene

Pathways & Interactions for ENSG00000248240 Gene

PathCards logo

SuperPathways for ENSG00000248240 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000248240 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248240 Gene

Drugs & Compounds for ENSG00000248240 Gene

No Compound Related Data Available

Transcripts for ENSG00000248240 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000248240 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000061B720_9606 lncRNA 512 4

Ensembl: ENST00000504277 (view in UCSC) ,

LncBook: HSALNT0087276,

LNCipedia: lnc-NNT-2:4,

NONCODE: NONHSAT101319.2,

URS00008C352D_9606 lncRNA 8268 2

LNCipedia: lnc-NNT-2:2,

NONCODE: NONHSAT101318.2,

URS0000D59D2D_9606 lncRNA 6880 2

LncBook: HSALNT0087275,

LNCipedia: lnc-NNT-2:5,

URS00009B5B00_9606 lncRNA 1633 2

LncBook: HSALNT0087278,

NONCODE: NONHSAT202559.1,

URS00009C4756_9606 lncRNA 512 2

LncBook: HSALNT0087277,

NONCODE: NONHSAT202558.1,

ENSG00000248240 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248240 Gene

No ASD Table

Relevant External Links for ENSG00000248240 Gene

GeneLoc Exon Structure for
ENSG00000248240

No data available for mRNA/cDNA for ENSG00000248240 Gene

Expression for ENSG00000248240 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248240 Gene

genes like me logo Genes that share expression patterns with ENSG00000248240: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248240 Gene

Orthologs for ENSG00000248240 Gene

Evolution for ENSG00000248240 Gene

ENSEMBL:
Gene Tree for ENSG00000248240 (if available)
TreeFam:
Gene Tree for ENSG00000248240 (if available)

No data available for Orthologs for ENSG00000248240 Gene

Paralogs for ENSG00000248240 Gene

No data available for Paralogs for ENSG00000248240 Gene

Variants for ENSG00000248240 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248240 Gene

Disorders for ENSG00000248240 Gene

No disorders were found for ENSG00000248240 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000248240 Gene

Publications for ENSG00000248240 Gene

No publications were found for ENSG00000248240 Gene.

No data available for Mastermind for ENSG00000248240 Gene

Products for ENSG00000248240 Gene

Sources for ENSG00000248240 Gene