Aliases for ENSG00000248172 Gene

Data sources for ENSG00000248172 Gene:

RNA type for ENSG00000248172 Gene

lncRNA

Aliases for ENSG00000248172 Gene

External Ids for ENSG00000248172 Gene

Previous GeneCards Identifiers for ENSG00000248172 Gene

  • GC17P048074

Summaries for ENSG00000248172 Gene

GeneCards Summary for ENSG00000248172 Gene

ENSG00000248172 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248172 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248172 Gene

Genomics for ENSG00000248172 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000248172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049996 Promoter/Enhancer 1.2 Ensembl ENCODE 250.7 +0.2 187 0.8 ZNF654 NFIC ZBTB10 CTCF REST TRIM22 ZNF639 ZNF217 RAD21 SMC3 DLX3 ENSG00000248172 piR-52475-006 ITGA3
GH17J050002 Promoter 1 CraniofacialAtlas 250.7 -0.4 -351 0.2 ZNF654 NFIC ZBTB10 REST TRIM22 ZNF639 CTCF ZNF217 SMC3 GABPB1 DLX3 ENSG00000248172 ITGA3
GH17J049997 Enhancer 0.9 ENCODE 250.7 +1.5 1534 0.2 ZNF654 MXD4 CTCF REST ELK1 TRIM22 BHLHE40 SIN3A THAP11 ELF1 ENSG00000248172 ENSG00000262837 LUC7L3 DLX3 piR-52475-006 ITGA3
GH17J049998 Enhancer 0.5 CraniofacialAtlas 250.7 -0.6 -551 0.2 ZBTB10 CTCF IKZF5 EZH2 ZBTB25 DLX3 ENSG00000248172 ITGA3
GH17J049999 Promoter 0.4 Ensembl 250.7 +0.8 813 0.2 EZH2 ENSG00000248172 DLX3 piR-52475-006 ITGA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248172 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000248172 Gene

Latest Assembly
chr17:49,996,888-50,020,092
(GRCh38/hg38)
Size:
23,205 bases
Orientation:
Plus strand

Previous Assembly
chr17:48,074,253-48,094,208
(GRCh37/hg19 by Ensembl)
Size:
19,956 bases
Orientation:
Plus strand

Genomic View for ENSG00000248172 Gene

Genes around ENSG00000248172 on UCSC Golden Path with GeneCards custom track
ENSG00000248172 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000248172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248172 Gene

Proteins for ENSG00000248172 Gene

Post-translational modifications for ENSG00000248172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248172 Gene

Domains & Families for ENSG00000248172 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248172 Gene

Function for ENSG00000248172 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248172 Gene

Localization for ENSG00000248172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248172 Gene

Pathways & Interactions for ENSG00000248172 Gene

PathCards logo

SuperPathways for ENSG00000248172 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000248172 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248172 Gene

Drugs & Compounds for ENSG00000248172 Gene

No Compound Related Data Available

Transcripts for ENSG00000248172 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000248172 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00005F517D_9606 lncRNA 586 4

Ensembl: ENST00000511867 (view in UCSC) ,

LncBook: HSALNT0242275,

LNCipedia: lnc-DLX4-1:1,

NONCODE: NONHSAT054577.2,

URS0001BDBB3E_9606 lncRNA 3886 1

LncBook: HSALNT0242276,

URS0001BCC1C9_9606 lncRNA 586 1

LncBook: HSALNT0242275,

ENSG00000248172 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248172 Gene

No ASD Table

Relevant External Links for ENSG00000248172 Gene

GeneLoc Exon Structure for
ENSG00000248172

No data available for mRNA/cDNA for ENSG00000248172 Gene

Expression for ENSG00000248172 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248172 Gene

genes like me logo Genes that share expression patterns with ENSG00000248172: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248172 Gene

Orthologs for ENSG00000248172 Gene

Evolution for ENSG00000248172 Gene

ENSEMBL:
Gene Tree for ENSG00000248172 (if available)
TreeFam:
Gene Tree for ENSG00000248172 (if available)

No data available for Orthologs for ENSG00000248172 Gene

Paralogs for ENSG00000248172 Gene

No data available for Paralogs for ENSG00000248172 Gene

Variants for ENSG00000248172 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248172 Gene

Disorders for ENSG00000248172 Gene

No disorders were found for ENSG00000248172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000248172 Gene

Publications for ENSG00000248172 Gene

No publications were found for ENSG00000248172 Gene.

No data available for Mastermind for ENSG00000248172 Gene

Products for ENSG00000248172 Gene

Sources for ENSG00000248172 Gene