Aliases for ENSG00000248015 Gene

Subcategory (RNA class) for ENSG00000248015 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000248015 Gene

  • Novel Transcript, Antisense To NDUFS7 5
  • NONHSAG024364.2 91
  • HSALNG0123022 164
  • AC005329.1 5
  • Lnc-GAMT-1 165

External Ids for ENSG00000248015 Gene

Summaries for ENSG00000248015 Gene

GeneCards Summary for ENSG00000248015 Gene

ENSG00000248015 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000248015 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000248015 Gene

Genomics for ENSG00000248015 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000248015 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J001394 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 627 3.1 HNRNPL POLR2A ZIC2 RBFOX2 PKNOX1 PATZ1 ZNF740 SP1 ZNF600 ZNF341 ENSG00000248015 TMEM259 DAZAP1 LOC100288123 PTBP1 TCF3 CIRBP ENSG00000267317 PWWP3A SF3A2
GH19J001546 Enhancer 0.8 ENCODE 10.9 -149.9 -149870 0.2 GATAD2A CTCF PRDM10 ZNF629 IKZF1 BACH1 ZNF143 MTA2 PATZ1 REST RF00017-2728 ATP8B3 REXO1 TCF3 PCSK4 REEP6 C19orf25 RNU6-1223P DAZAP1 GAMT
GH19J001399 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -5.0 -5036 4 HNRNPL GATAD2A REST NFKBIZ KDM1A ZNF692 RCOR2 ZNF7 BACH1 LARP7 GAMT SF3A2 DAZAP1 PTBP1 TMEM259 ENSG00000267317 TCF3 LOC100288123 GRIN3B ADAT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000248015 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000248015 Gene

Genomic Locations for ENSG00000248015 Gene
chr19:1,392,170-1,396,467
(GRCh38/hg38)
Size:
4,298 bases
Orientation:
Minus strand
chr19:1,392,169-1,396,466
(GRCh37/hg19)
Size:
4,298 bases
Orientation:
Minus strand

Genomic View for ENSG00000248015 Gene

Genes around ENSG00000248015 on UCSC Golden Path with GeneCards custom track
ENSG00000248015 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000248015 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000248015 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000248015 Gene

Proteins for ENSG00000248015 Gene

Post-translational modifications for ENSG00000248015 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000248015 Gene

Domains & Families for ENSG00000248015 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000248015 Gene

Function for ENSG00000248015 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000248015 Gene

Localization for ENSG00000248015 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000248015 Gene

Pathways & Interactions for ENSG00000248015 Gene

PathCards logo

SuperPathways for ENSG00000248015 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000248015 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000248015 Gene

Drugs & Compounds for ENSG00000248015 Gene

No Compound Related Data Available

Transcripts for ENSG00000248015 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000248015 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000015EABC_9606 lncRNA 571 4

Ensembl: ENST00000585596 (view in UCSC) ,

LncBook: HSALNT0254229,

LNCipedia: lnc-GAMT-1:4,

NONCODE: NONHSAT060301.2,

URS00000E1475_9606 lncRNA 3571 3

Ensembl: ENST00000501448 (view in UCSC) ,

LNCipedia: lnc-GAMT-1:1,

NONCODE: NONHSAT060300.2,

URS00005946FA_9606 lncRNA 574 2

Ensembl: ENST00000589734 (view in UCSC) ,

LNCipedia: lnc-GAMT-1:3,

URS0000E679F3_9606 lncRNA 745 1

Ensembl: ENST00000650765 (view in UCSC) ,

URS00008B2A0D_9606 lncRNA 4298 2

LNCipedia: lnc-GAMT-1:2,

NONCODE: NONHSAT060299.2,

ENSG00000248015 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000248015 Gene

No ASD Table

Relevant External Links for ENSG00000248015 Gene

GeneLoc Exon Structure for
ENSG00000248015

No data available for mRNA/cDNA for ENSG00000248015 Gene

Expression for ENSG00000248015 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000248015 Gene

genes like me logo Genes that share expression patterns with ENSG00000248015: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000248015 Gene

Orthologs for ENSG00000248015 Gene

Evolution for ENSG00000248015 Gene

ENSEMBL:
Gene Tree for ENSG00000248015 (if available)
TreeFam:
Gene Tree for ENSG00000248015 (if available)

No data available for Orthologs for ENSG00000248015 Gene

Paralogs for ENSG00000248015 Gene

No data available for Paralogs for ENSG00000248015 Gene

Variants for ENSG00000248015 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000248015 Gene

Disorders for ENSG00000248015 Gene

Additional Disease Information for ENSG00000248015

No disorders were found for ENSG00000248015 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000248015 Gene

Publications for ENSG00000248015 Gene

No publications were found for ENSG00000248015 Gene.

No data available for Mastermind for ENSG00000248015 Gene

Products for ENSG00000248015 Gene

Sources for ENSG00000248015 Gene