Aliases for ENSG00000245688 Gene

Subcategory (RNA class) for ENSG00000245688 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ENSG00000245688 Gene

  • Novel Transcript 5
  • NONHSAG042401 94
  • HSALNG0047024 169
  • AC008659.1 5
  • Lnc-CLK4-4 170

External Ids for ENSG00000245688 Gene

Previous GeneCards Identifiers for ENSG00000245688 Gene

  • GC05M177865

Summaries for ENSG00000245688 Gene

GeneCards Summary for ENSG00000245688 Gene

ENSG00000245688 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000245688 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000245688 Gene

Genomics for ENSG00000245688 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000245688 Gene

Promoters and enhancers for ENSG00000245688 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J178443 Promoter 0.5 Ensembl 750.6 0.0 -7 0.2 MYC MAX ENSG00000245688 COL23A1 CLK4 piR-31965
GH05J178442 Enhancer 0.4 CraniofacialAtlas 750.6 +0.5 494 0.8 MAFK ZNF316 MAFG EMSY ENSG00000245688 ENSG00000253698 COL23A1 CLK4 piR-40394
GH05J178420 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 4.9 +23.4 23394 5.8 SMARCE1 RUNX1 CC2D1A L3MBTL2 DACH1 TEAD4 ZNF148 CBFA2T2 MLLT1 SMARCA4 FAM193B ENSG00000245688 piR-40394 COL23A1
GH05J178429 Enhancer 0.6 Ensembl CraniofacialAtlas 5.1 +14.1 14093 3.6 CEBPA BCOR NFIC ZMYM3 COL23A1 ENSG00000245688 piR-40394
GH05J178452 Enhancer 0.9 CraniofacialAtlas 0.4 -6.0 -6006 0.2 SMARCE1 RUNX1 L3MBTL2 TEAD4 GTF2F1 CBFA2T2 SMARCA4 ZNF639 TRIM24 MTA1 ZFP2 ZNF879 ENSG00000247679 ZNF454 ENSG00000246596 ENSG00000254035 GRM6 ZNF354B ZNF354C NHP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000245688 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000245688 Gene

Genomic Locations for ENSG00000245688 Gene
chr5:178,438,681-178,443,094
(GRCh38/hg38)
Size:
4,414 bases
Orientation:
Minus strand
chr5:177,865,682-177,870,095
(GRCh37/hg19)
Size:
4,414 bases
Orientation:
Minus strand

Genomic View for ENSG00000245688 Gene

Genes around ENSG00000245688 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000245688 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000245688 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000245688 Gene

Proteins for ENSG00000245688 Gene

Post-translational modifications for ENSG00000245688 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000245688 Gene

Domains & Families for ENSG00000245688 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000245688 Gene

Function for ENSG00000245688 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000245688 Gene

Localization for ENSG00000245688 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000245688 Gene

Pathways & Interactions for ENSG00000245688 Gene

PathCards logo

SuperPathways for ENSG00000245688 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000245688 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000245688 Gene

Drugs & Compounds for ENSG00000245688 Gene

No Compound Related Data Available

Transcripts for ENSG00000245688 Gene

mRNA/cDNA for ENSG00000245688 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) NONCODE transcripts :
(1) LNCipedia transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000245688 Gene

No ASD Table

Relevant External Links for ENSG00000245688 Gene

GeneLoc Exon Structure for
ENSG00000245688

Expression for ENSG00000245688 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000245688 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000245688 Gene

This gene is overexpressed in Heart - Left Ventricle (x19.4), Testis (x10.8), and Heart - Atrial Appendage (x5.7).
genes like me logo Genes that share expression patterns with ENSG00000245688: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000245688 Gene

Orthologs for ENSG00000245688 Gene

Evolution for ENSG00000245688 Gene

ENSEMBL:
Gene Tree for ENSG00000245688 (if available)
TreeFam:
Gene Tree for ENSG00000245688 (if available)

No data available for Orthologs for ENSG00000245688 Gene

Paralogs for ENSG00000245688 Gene

No data available for Paralogs for ENSG00000245688 Gene

Variants for ENSG00000245688 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000245688 Gene

Disorders for ENSG00000245688 Gene

No disorders were found for ENSG00000245688 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000245688 Gene

Publications for ENSG00000245688 Gene

No publications were found for ENSG00000245688 Gene.

No data available for External Links for ENSG00000245688 Gene

Products for ENSG00000245688 Gene

Sources for ENSG00000245688 Gene