Aliases for ENSG00000242536 Gene

Subcategory (RNA class) for ENSG00000242536 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000242536 Gene

  • Novel Transcript 5
  • HSALNG0030122 167
  • NONHSAG036501 92
  • Lnc-SHOX2-1 168
  • AC079943.2 5

External Ids for ENSG00000242536 Gene

Previous GeneCards Identifiers for ENSG00000242536 Gene

  • GC03M157734
  • GC03M158016

Summaries for ENSG00000242536 Gene

GeneCards Summary for ENSG00000242536 Gene

ENSG00000242536 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000242536 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000242536 Gene

Genomics for ENSG00000242536 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000242536 Gene

Promoters and enhancers for ENSG00000242536 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J158057 Enhancer 1.1 VISTA UCNEbase 6.6 +29.9 29915 2.3 TRIM28 PBX2 CUX1 SMARCA4 MEIS2 ATF2 FOXK2 CTBP1 PKNOX1 SOX6 SHOX2 ENSG00000242536 MLF1 piR-60885-084 lnc-SHOX2-4
GH03J158061 Enhancer 0.7 VISTA UCNEbase 6.6 +26.5 26465 1.8 ENSG00000242536 piR-60885-084 lnc-SHOX2-4
GH03J157922 Enhancer 0.5 ENCODE CraniofacialAtlas 5.2 +167.4 167363 0.7 EZH2 ZNF24 ENSG00000242536 RSRC1 RF00100-090 RN7SKP46 lnc-SHOX2-6 piR-40476-049
GH03J158097 Enhancer 0.9 ENCODE 0.4 -9.1 -9120 0.4 ZBTB40 ZNF217 SIN3A TCF12 MYC USF1 POLR2G PHF8 ZFX POLR2A ENSG00000242536 RSRC1 SHOX2
GH03J158094 Enhancer 0.6 Ensembl 0.4 -6.3 -6336 1.5 HDAC2 RELA CTCF MEF2B POLR2A EZH2 CBX8 EBF1 NR2F1 RAD21 SHOX2 ENSG00000242536 RSRC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000242536 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000242536 Gene

Genomic Locations for ENSG00000242536 Gene
chr3:157,814,822-158,088,997
(GRCh38/hg38)
Size:
274,176 bases
Orientation:
Minus strand
chr3:157,734,005-157,806,786
(GRCh37/hg19)
Size:
72,782 bases
Orientation:
Minus strand

Genomic View for ENSG00000242536 Gene

Genes around ENSG00000242536 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000242536 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000242536 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000242536 Gene

Proteins for ENSG00000242536 Gene

Post-translational modifications for ENSG00000242536 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000242536 Gene

Domains & Families for ENSG00000242536 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000242536 Gene

Function for ENSG00000242536 Gene

Phenotypes From GWAS Catalog for ENSG00000242536 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000242536 Gene

Localization for ENSG00000242536 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000242536 Gene

Pathways & Interactions for ENSG00000242536 Gene

PathCards logo

SuperPathways for ENSG00000242536 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000242536 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000242536 Gene

Drugs & Compounds for ENSG00000242536 Gene

No Compound Related Data Available

Transcripts for ENSG00000242536 Gene

mRNA/cDNA for ENSG00000242536 Gene

4 RNACentral transcripts :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000242536 Gene

No ASD Table

Relevant External Links for ENSG00000242536 Gene

GeneLoc Exon Structure for
ENSG00000242536

Expression for ENSG00000242536 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000242536 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000242536 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with ENSG00000242536: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000242536 Gene

Orthologs for ENSG00000242536 Gene

Evolution for ENSG00000242536 Gene

ENSEMBL:
Gene Tree for ENSG00000242536 (if available)
TreeFam:
Gene Tree for ENSG00000242536 (if available)

No data available for Orthologs for ENSG00000242536 Gene

Paralogs for ENSG00000242536 Gene

No data available for Paralogs for ENSG00000242536 Gene

Variants for ENSG00000242536 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000242536 Gene

Disorders for ENSG00000242536 Gene

No disorders were found for ENSG00000242536 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000242536 Gene

Publications for ENSG00000242536 Gene

No publications were found for ENSG00000242536 Gene.

No data available for Mastermind for ENSG00000242536 Gene

Products for ENSG00000242536 Gene

Sources for ENSG00000242536 Gene