ENSG00000241720 Gene (RNA Gene)

 

GC01P109725
GIFtS:
7
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Aliases for ENSG00000241720 Gene

Subcategory (RNA class) for ENSG00000241720 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000241720 Gene

  • Novel Transcript 5
  • HSALNG0005916 164
  • Lnc-GSTM2-1 165
  • AL158847.1 5

External Ids for ENSG00000241720 Gene

Previous GeneCards Identifiers for ENSG00000241720 Gene

  • GC01P110230
  • GC01P110268

Summaries for ENSG00000241720 Gene

GeneCards Summary for ENSG00000241720 Gene

ENSG00000241720 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000241720 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000241720 Gene

Genomics for ENSG00000241720 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ENSG00000241720 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J109725 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 +0.3 264 1.6 LEF1 JUND FOXA1 MTA2 ZNF24 MTA1 DPF2 HDAC1 SOX6 TCF12 ENSG00000241720 GSTM3 GSTM5 EPS8L3 ENSG00000228703 AMPD2 AHCYL1 GPR61 ENSG00000225113 RNU6V
GH01J110707 Enhancer 0.8 FANTOM5 Ensembl 4.6 +982.8 982758 3.4 ZIC2 NR2C2 NFIC CEBPG SPI1 ATF4 TAL1 HDAC2 CEBPB SMARCA4 KCNA3 CD53 ENSG00000241720 LRIF1 lnc-CD53-4 ENSG00000199710 LOC107985174 lnc-PROK1-4
GH01J109739 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +14.4 14357 2.2 TARDBP ZSCAN4 RBFOX2 PKNOX1 POLR2A IRF2 SP1 ZNF501 ELF4 ZNF600 GSTM3 piR-56133-007 ENSG00000241720 GSTM5
GH01J109711 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -13.4 -13419 1.5 SCRT2 POLR2A GSTM5 GSTM3 GSTM1 SORT1 ENSG00000241720
GH01J109761 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 0.3 +39.2 39188 6.1 HNRNPL CREB1 GATAD2A ZNF629 TFE3 LEF1 IKZF1 RCOR2 JUND MTA2 EPS8L3 lnc-GSTM3-4 piR-30350-006 GSTM3 AHCYL1 ENSG00000228703 AMPD2 ENSG00000254942 GPR61 GNAT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000241720 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000241720 Gene

Genomic Locations for ENSG00000241720 Gene
chr1:109,725,743-109,775,252
(GRCh38/hg38)
Size:
49,510 bases
Orientation:
Plus strand
chr1:110,268,442-110,317,874
(GRCh37/hg19)
Size:
49,433 bases
Orientation:
Plus strand

Genomic View for ENSG00000241720 Gene

Genes around ENSG00000241720 on UCSC Golden Path with GeneCards custom track
ENSG00000241720 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000241720 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000241720 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for RefSeq DNA sequence for ENSG00000241720 Gene

Proteins for ENSG00000241720 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ENSG00000241720 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000241720 Gene

Domains & Families for ENSG00000241720 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000241720 Gene

Function for ENSG00000241720 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ENSG00000241720 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000241720 Gene

Localization for ENSG00000241720 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000241720 Gene

Pathways & Interactions for ENSG00000241720 Gene

PathCards logo

SuperPathways for ENSG00000241720 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000241720 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000241720 Gene

Drugs & Compounds for ENSG00000241720 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ENSG00000241720 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000241720 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003CD9F9_9606 lncRNA 808 2

Ensembl: ENST00000431955 (view in UCSC) ,

LncBook: HSALNT0012268,

URS0000D58E7F_9606 lncRNA 365 2

LncBook: HSALNT0012267,

LNCipedia: lnc-GSTM2-1:2,

ENSG00000241720 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000241720 Gene

No ASD Table

Relevant External Links for ENSG00000241720 Gene

GeneLoc Exon Structure for
ENSG00000241720

No data available for mRNA/cDNA for ENSG00000241720 Gene

Expression for ENSG00000241720 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000241720 Gene

mRNA expression in normal human tissues for ENSG00000241720 Gene
mRNA expression by GTEx for ENSG00000241720 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000241720 Gene

This gene is overexpressed in Testis (x7.3).
genes like me logo Genes that share expression patterns with ENSG00000241720: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000241720 Gene

Orthologs for ENSG00000241720 Gene

Evolution for ENSG00000241720 Gene

ENSEMBL:
Gene Tree for ENSG00000241720 (if available)
TreeFam:
Gene Tree for ENSG00000241720 (if available)

No data available for Orthologs for ENSG00000241720 Gene

Paralogs for ENSG00000241720 Gene

No data available for Paralogs for ENSG00000241720 Gene

Variants for ENSG00000241720 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000241720 Gene

Disorders for ENSG00000241720 Gene

No disorders were found for ENSG00000241720 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000241720 Gene

Publications for ENSG00000241720 Gene

No publications were found for ENSG00000241720 Gene.

No data available for Mastermind for ENSG00000241720 Gene

Products for ENSG00000241720 Gene

Sources for ENSG00000241720 Gene