Aliases for ENSG00000241666 Gene

Subcategory (RNA class) for ENSG00000241666 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ENSG00000241666 Gene

  • Novel Transcript 5
  • HSALNG0008239 164
  • Lnc-CREG1-3 165
  • AL031733.2 5

External Ids for ENSG00000241666 Gene

Previous GeneCards Identifiers for ENSG00000241666 Gene

  • GC01P167596

Summaries for ENSG00000241666 Gene

GeneCards Summary for ENSG00000241666 Gene

ENSG00000241666 is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ENSG00000241666 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for ENSG00000241666 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000241666 Gene

Genomics for ENSG00000241666 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000241666 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J167626 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 610.3 +0.1 109 8.1 RNF2 ARHGAP35 SP1 GATAD2A HNRNPL ZNF512 LEF1 IKZF1 POLR2A BACH1 RCSD1 ENSG00000241666 MPZL1 DUTP6 POU2F1 CREG1 CD247 NONHSAG003377.2
GH01J167634 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 8.3 -6.1 -6055 4.1 ARHGAP35 TEAD4 ZNF512 LEF1 IKZF1 POLR2A JUND STAT3 MTA2 PHF21A CREG1 RCSD1 MPZL1 ENSG00000241666 HSALNG0008246
GH01J167562 Enhancer 1.2 FANTOM5 Ensembl ENCODE 4.8 +65.9 65873 6.4 ZNF692 JUND FOXA1 DPF2 HDAC1 SOX6 ATF7 CEBPB MGA EGR1 CREG1 RCSD1 ENSG00000241666 MN296891 RF00017-384
GH01J167621 Enhancer 0.6 ENCODE dbSUPER 8.7 +8.3 8256 1.5 ZNF512 IKZF1 BCOR ZBTB33 CREG1 RCSD1 ENSG00000241666 NONHSAG003377.2 MN309010
GH01J167615 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +12.9 12928 3.2 ZNF512 LEF1 JUND MTA1 IKZF2 KAT8 SP1 BRD9 HDAC1 ETV6 RCSD1 CREG1 POU2F1 CD247 MN309010 NONHSAG003377.2 ENSG00000241666
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000241666 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000241666 Gene

Genomic Locations for ENSG00000241666 Gene
chr1:167,577,413-167,630,674
(GRCh38/hg38)
Size:
53,262 bases
Orientation:
Minus strand
chr1:167,596,622-167,599,911
(GRCh37/hg19)
Size:
3,290 bases
Orientation:
Minus strand

Genomic View for ENSG00000241666 Gene

Genes around ENSG00000241666 on UCSC Golden Path with GeneCards custom track
ENSG00000241666 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000241666 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000241666 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000241666 Gene

Proteins for ENSG00000241666 Gene

Post-translational modifications for ENSG00000241666 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000241666 Gene

Domains & Families for ENSG00000241666 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000241666 Gene

Function for ENSG00000241666 Gene

Phenotypes From GWAS Catalog for ENSG00000241666 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000241666 Gene

Localization for ENSG00000241666 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000241666 Gene

Pathways & Interactions for ENSG00000241666 Gene

PathCards logo

SuperPathways for ENSG00000241666 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000241666 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000241666 Gene

Drugs & Compounds for ENSG00000241666 Gene

No Compound Related Data Available

Transcripts for ENSG00000241666 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000241666 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004E48E2_9606 lncRNA 2523 3

Ensembl: ENST00000451992 (view in UCSC) ,

LncBook: HSALNT0017077,

LNCipedia: lnc-CREG1-3:1,

URS0000D5C4C7_9606 lncRNA 7246 2

LncBook: HSALNT0017061,

LNCipedia: lnc-CREG1-3:5,

URS0000D59B18_9606 lncRNA 3172 1

LNCipedia: lnc-CREG1-3:4,

URS0000D5C965_9606 lncRNA 2736 1

LNCipedia: lnc-CREG1-3:2,

URS0000D5C05F_9606 lncRNA 1930 1

LNCipedia: lnc-CREG1-3:3,

ENSG00000241666 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000241666 Gene

No ASD Table

Relevant External Links for ENSG00000241666 Gene

GeneLoc Exon Structure for
ENSG00000241666

No data available for mRNA/cDNA for ENSG00000241666 Gene

Expression for ENSG00000241666 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000241666 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000241666 Gene

This gene is overexpressed in Whole Blood (x14.3), Spleen (x8.2), and Small Intestine - Terminal Ileum (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000241666: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000241666 Gene

Orthologs for ENSG00000241666 Gene

Evolution for ENSG00000241666 Gene

ENSEMBL:
Gene Tree for ENSG00000241666 (if available)
TreeFam:
Gene Tree for ENSG00000241666 (if available)

No data available for Orthologs for ENSG00000241666 Gene

Paralogs for ENSG00000241666 Gene

No data available for Paralogs for ENSG00000241666 Gene

Variants for ENSG00000241666 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000241666 Gene

Disorders for ENSG00000241666 Gene

Additional Disease Information for ENSG00000241666

No disorders were found for ENSG00000241666 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000241666 Gene

Publications for ENSG00000241666 Gene

No publications were found for ENSG00000241666 Gene.

No data available for Mastermind for ENSG00000241666 Gene

Products for ENSG00000241666 Gene

Sources for ENSG00000241666 Gene