Aliases for ENSG00000241220 Gene

Subcategory (RNA class) for ENSG00000241220 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000241220 Gene

  • Novel Transcript 5
  • NONHSAG036428 92
  • HSALNG0029921 167
  • Lnc-RAP2B-4 168
  • AC078788.1 5

External Ids for ENSG00000241220 Gene

Previous GeneCards Identifiers for ENSG00000241220 Gene

  • GC03P153075

Summaries for ENSG00000241220 Gene

GeneCards Summary for ENSG00000241220 Gene

ENSG00000241220 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000241220 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000241220 Gene

Genomics for ENSG00000241220 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000241220 Gene

Promoters and enhancers for ENSG00000241220 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J153130 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 4.2 -227.3 -227306 4.4 JUND FOS ZNF639 EP300 TRIM22 RBM25 OSR2 BCL11A ZNF316 MAFF ENSG00000241671 LOC100418712 RAP2B ENSG00000241220 piR-52079-149
GH03J153313 Enhancer 0.3 Ensembl 5.5 -43.3 -43306 1.6 POLR2A ENSG00000241220 HSALNG0029921 lnc-DHX36-9
GH03J153348 Enhancer 0.8 Ensembl ENCODE 0.4 -7.3 -7307 3.2 TCF7 SAP30 TEAD1 HDAC2 FOXA2 NANOG TCF12 CREM HHEX SIN3A ENSG00000244268 RAP2B ENSG00000241220 piR-37170-044 LOC105374166
GH03J153372 Enhancer 0.7 Ensembl 0.4 +16.2 16194 2.6 REST FOXA2 CEBPG FOS CEBPB ZBTB33 SPI1 JUND IRF1 STAT3 ENSG00000241912 ENSG00000241220 LOC105374166
GH03J153343 Enhancer 0.4 Ensembl 0.4 -13.2 -13206 1 NFE2 NR2F6 HMBOX1 RAP2B piR-37170-044 ENSG00000241220 LOC105374166
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000241220 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000241220 Gene

Genomic Locations for ENSG00000241220 Gene
chr3:153,357,107-153,374,186
(GRCh38/hg38)
Size:
17,080 bases
Orientation:
Plus strand
chr3:153,074,896-153,091,975
(GRCh37/hg19)
Size:
17,080 bases
Orientation:
Plus strand

Genomic View for ENSG00000241220 Gene

Genes around ENSG00000241220 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000241220 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000241220 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000241220 Gene

Proteins for ENSG00000241220 Gene

Post-translational modifications for ENSG00000241220 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000241220 Gene

Domains & Families for ENSG00000241220 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000241220 Gene

Function for ENSG00000241220 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000241220 Gene

Localization for ENSG00000241220 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000241220 Gene

Pathways & Interactions for ENSG00000241220 Gene

PathCards logo

SuperPathways for ENSG00000241220 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000241220 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000241220 Gene

Drugs & Compounds for ENSG00000241220 Gene

No Compound Related Data Available

Transcripts for ENSG00000241220 Gene

mRNA/cDNA for ENSG00000241220 Gene

4 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000241220 Gene

No ASD Table

Relevant External Links for ENSG00000241220 Gene

GeneLoc Exon Structure for
ENSG00000241220

Expression for ENSG00000241220 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000241220 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000241220 Gene

This gene is overexpressed in Spleen (x4.2).
genes like me logo Genes that share expression patterns with ENSG00000241220: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000241220 Gene

Orthologs for ENSG00000241220 Gene

Evolution for ENSG00000241220 Gene

ENSEMBL:
Gene Tree for ENSG00000241220 (if available)
TreeFam:
Gene Tree for ENSG00000241220 (if available)

No data available for Orthologs for ENSG00000241220 Gene

Paralogs for ENSG00000241220 Gene

No data available for Paralogs for ENSG00000241220 Gene

Variants for ENSG00000241220 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000241220 Gene

Disorders for ENSG00000241220 Gene

No disorders were found for ENSG00000241220 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000241220 Gene

Publications for ENSG00000241220 Gene

No publications were found for ENSG00000241220 Gene.

No data available for Mastermind for ENSG00000241220 Gene

Products for ENSG00000241220 Gene

Sources for ENSG00000241220 Gene