Aliases for ENSG00000239922 Gene

Subcategory (RNA class) for ENSG00000239922 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ENSG00000239922 Gene

  • Novel Transcript 5
  • HSALNG0029673 167
  • NONHSAG036325 92
  • AC092958.1 5
  • Lnc-ZIC1-5 168

External Ids for ENSG00000239922 Gene

Previous GeneCards Identifiers for ENSG00000239922 Gene

  • GC03P147657

Summaries for ENSG00000239922 Gene

GeneCards Summary for ENSG00000239922 Gene

ENSG00000239922 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000239922 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000239922 Gene

Genomics for ENSG00000239922 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000239922 Gene

Promoters and enhancers for ENSG00000239922 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J147940 Promoter/Enhancer 0.8 Ensembl CraniofacialAtlas 500.7 +1.2 1196 2.6 ZNF316 MAFF MAFK CTCF RAD21 POLR2A ENSG00000239922 lnc-ZIC1-8
GH03J147933 Enhancer 1.2 VISTA UCNEbase ENCODE 0.4 -5.1 -5136 1.8 HDAC2 NANOG TCF12 JUND CHD7 SP1 EGR1 POU5F1 CHD2 ENSG00000239922 piR-48820-070
GH03J147942 Enhancer 0.5 ENCODE 0.7 +3.6 3574 1.8 JUND FOS REST FOSL2 JUN BHLHE40 POLR2A MAZ RAD21 STAT3 lnc-ZIC1-8 ENSG00000239922
GH03J147945 Enhancer 0.8 ENCODE CraniofacialAtlas 0.4 +6.3 6313 2 CTCF RAD21 SMC3 RCOR1 POLR2A MAX SMARCA4 HNF4A ZNF366 YY1 lnc-ZIC1-8 ENSG00000239922 piR-36573-047
GH03J147929 Enhancer 0.6 Ensembl ENCODE 0.4 -8.7 -8704 3.2 FOXA1 SMARCA4 NFE2L2 PKNOX1 ENSG00000239922 piR-48820-070
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000239922 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000239922 Gene

Genomic Locations for ENSG00000239922 Gene
chr3:147,939,905-148,007,127
(GRCh38/hg38)
Size:
67,223 bases
Orientation:
Plus strand
chr3:147,657,791-147,724,542
(GRCh37/hg19)
Size:
66,752 bases
Orientation:
Plus strand

Genomic View for ENSG00000239922 Gene

Genes around ENSG00000239922 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000239922 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000239922 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000239922 Gene

Proteins for ENSG00000239922 Gene

Post-translational modifications for ENSG00000239922 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000239922 Gene

Domains & Families for ENSG00000239922 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000239922 Gene

Function for ENSG00000239922 Gene

Phenotypes From GWAS Catalog for ENSG00000239922 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000239922 Gene

Localization for ENSG00000239922 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000239922 Gene

Pathways & Interactions for ENSG00000239922 Gene

PathCards logo

SuperPathways for ENSG00000239922 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000239922 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000239922 Gene

Drugs & Compounds for ENSG00000239922 Gene

No Compound Related Data Available

Transcripts for ENSG00000239922 Gene

mRNA/cDNA for ENSG00000239922 Gene

15 RNACentral transcripts :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
10 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000239922 Gene

No ASD Table

Relevant External Links for ENSG00000239922 Gene

GeneLoc Exon Structure for
ENSG00000239922

Expression for ENSG00000239922 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000239922 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000239922 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x9.8), Brain - Substantia nigra (x6.6), Brain - Hippocampus (x4.7), Brain - Hypothalamus (x4.6), and Brain - Putamen (basal ganglia) (x4.5).
genes like me logo Genes that share expression patterns with ENSG00000239922: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000239922 Gene

Orthologs for ENSG00000239922 Gene

Evolution for ENSG00000239922 Gene

ENSEMBL:
Gene Tree for ENSG00000239922 (if available)
TreeFam:
Gene Tree for ENSG00000239922 (if available)

No data available for Orthologs for ENSG00000239922 Gene

Paralogs for ENSG00000239922 Gene

No data available for Paralogs for ENSG00000239922 Gene

Variants for ENSG00000239922 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000239922 Gene

Disorders for ENSG00000239922 Gene

No disorders were found for ENSG00000239922 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000239922 Gene

Publications for ENSG00000239922 Gene

No publications were found for ENSG00000239922 Gene.

No data available for Mastermind for ENSG00000239922 Gene

Products for ENSG00000239922 Gene

Sources for ENSG00000239922 Gene