Aliases for ENSG00000239142 Gene

Data sources for ENSG00000239142 Gene:

RNA type for ENSG00000239142 Gene

snoRNA

Aliases for ENSG00000239142 Gene

External Ids for ENSG00000239142 Gene

Previous GeneCards Identifiers for ENSG00000239142 Gene

  • GC10M005136
  • GC10M005137
  • GC10M005138

Summaries for ENSG00000239142 Gene

GeneCards Summary for ENSG00000239142 Gene

ENSG00000239142 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000239142 Gene

Additional gene information for ENSG00000239142 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000239142 Gene

Genomics for ENSG00000239142 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000239142 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J005094 Enhancer 0.5 ENCODE 250.7 +0.2 172 0 YY1 FOXA2 RXRA HNF4A SP1 ENSG00000239142 FJ601684-034 HSALNG0075830 AKR1C3 AKR1C4
GH10J005095 Enhancer 0.5 ENCODE 250.7 +0.3 262 0.1 YY1 FOXA2 RXRA HNF4A SP1 ENSG00000239142 FJ601684-034 HSALNG0075830 AKR1C3 AKR1C4
GH10J005017 Promoter/Enhancer 1.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 +72.8 72845 6.2 NCOR1 ZNF592 NFIC YY1 HOMEZ CTCF EP300 MAFF RXRA RAD21 AKR1C2 AKR1C3 ENSG00000239142 UCN3 AKR1C1 lnc-AKR1C2-6 piR-58297-034 HSALNG0075830
GH10J005289 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11 -200.1 -200100 8.8 NCOR1 ZNF592 CEBPA REST CTCF CEBPB BHLHE40 HOMEZ EP300 THAP11 LINC02561 lnc-UCN3-3 TUBAL3 UCN3 ENSG00000239142 AKR1C3 AKR1E2 lnc-TUBAL3-1 AKR1C4
GH10J005272 Enhancer 0.8 FANTOM5 Ensembl 11.8 -180.3 -180255 3.6 ZNF592 MAFF ZNF316 NFE2 MAFK NFE2L2 MAFG BACH1 EMSY AKR1C4 ENSG00000239142 AKR1C3 UCN3 LINC02561 TUBAL3 AKR1C7P lnc-TUBAL3-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000239142 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000239142 Gene

Latest Assembly
chr10:5,092,941-5,093,746
(GRCh38/hg38)
Size:
806 bases
Orientation:
Minus strand

Previous Assembly
chr10:5,135,600-5,135,735
(GRCh37/hg19 by Ensembl)
Size:
136 bases
Orientation:
Minus strand

Genomic View for ENSG00000239142 Gene

Genes around ENSG00000239142 on UCSC Golden Path with GeneCards custom track
ENSG00000239142 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000239142 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000239142 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000239142 Gene

Proteins for ENSG00000239142 Gene

Post-translational modifications for ENSG00000239142 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000239142 Gene

Domains & Families for ENSG00000239142 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000239142 Gene

Function for ENSG00000239142 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000239142 Gene

Localization for ENSG00000239142 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000239142 Gene

Pathways & Interactions for ENSG00000239142 Gene

PathCards logo

SuperPathways for ENSG00000239142 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000239142 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000239142 Gene

Drugs & Compounds for ENSG00000239142 Gene

No Compound Related Data Available

Transcripts for ENSG00000239142 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000239142 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000062D0A0_9606 snoRNA 136 3

Ensembl: ENST00000459536 (view in UCSC) ,

Rfam: RF00096,

snoDB: SNODB290,

URS0001BF32AB_9606 snoRNA 806 1

LncBook: HSALNT0158145,

ENSG00000239142 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000239142 Gene

No ASD Table

Relevant External Links for ENSG00000239142 Gene

GeneLoc Exon Structure for
ENSG00000239142

No data available for mRNA/cDNA for ENSG00000239142 Gene

Expression for ENSG00000239142 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000239142 Gene

genes like me logo Genes that share expression patterns with ENSG00000239142: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000239142 Gene

Orthologs for ENSG00000239142 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000239142 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia U8 30
  • 100 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm25369 30
  • 55 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia U8 30
  • 50 (a)
OneToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea U8 30
  • 41 (a)
OneToMany
Species where no ortholog for ENSG00000239142 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ENSG00000239142 Gene

ENSEMBL:
Gene Tree for ENSG00000239142 (if available)
TreeFam:
Gene Tree for ENSG00000239142 (if available)

Paralogs for ENSG00000239142 Gene

No data available for Paralogs for ENSG00000239142 Gene

Variants for ENSG00000239142 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000239142 Gene

Disorders for ENSG00000239142 Gene

No disorders were found for ENSG00000239142 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000239142 Gene

Publications for ENSG00000239142 Gene

No publications were found for ENSG00000239142 Gene.

No data available for Mastermind for ENSG00000239142 Gene

Products for ENSG00000239142 Gene

Sources for ENSG00000239142 Gene