Aliases for ENSG00000238685 Gene

Subcategory (RNA class) for ENSG00000238685 Gene

snoRNA

Number of RNA Genes sources:

1 / 14

Aliases for ENSG00000238685 Gene

  • AC092365.1 5
  • RF01225 172

External Ids for ENSG00000238685 Gene

Summaries for ENSG00000238685 Gene

GeneCards Summary for ENSG00000238685 Gene

ENSG00000238685 is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for ENSG00000238685 Gene

  • Small nucleolar RNA ACA64

Additional gene information for ENSG00000238685 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000238685 Gene

Genomics for ENSG00000238685 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000238685 Gene

Promoters and enhancers for ENSG00000238685 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J012529 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.3 -236.6 -236577 13.8 ZBTB40 ZNF217 ZSCAN5C SIN3A SP1 FOS EP300 ZIC2 REST ZBTB10 ENSG00000261560 ENSG00000263307 COX6CP1 ENSG00000238685 ZC3H7A ENSG00000261216 ENSG00000259899 SNX29 ENSG00000260601 lnc-SHISA9-8
GH16J012186 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +109.3 109325 3.2 SKI FOXA2 ZSCAN9 ESRRA CEBPB SAP130 NR3C1 ESR1 ZBTB33 NR2F2 ENSG00000238685 SNX29 piR-57133-219 RF00017-1974
GH16J012258 Enhancer 1.1 Ensembl ENCODE 11.2 +36.8 36765 5.1 EP300 FOXK2 ZNF217 CTCF ZSCAN5C NRF1 NCOR1 ZIC2 TCF7 ZBTB26 ENSG00000238685 piR-50437-234 SNX29
GH16J012318 Enhancer 1.1 Ensembl ENCODE 11.3 -22.1 -22078 10.8 ZBTB40 TCF12 NCOR1 FOS KDM6A TCF7 TGIF2 SKI TEAD1 TBX3 ENSG00000238685 RF00017-1975 SNX29
GH16J012609 Enhancer 1.2 Ensembl ENCODE 9.4 -315.3 -315259 5.6 EP300 FOXK2 TCF12 POLR2G NCOR1 GTF2E2 JUND PHB2 ZNF639 ZNF10 ENSG00000259899 ENSG00000274834 ENSG00000238685 CPPED1 SNX29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000238685 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000238685 Gene

Genomic Locations for ENSG00000238685 Gene
chr16:12,297,197-12,297,323
(GRCh38/hg38)
Size:
127 bases
Orientation:
Minus strand
chr16:12,391,054-12,391,180
(GRCh37/hg19)
Size:
127 bases
Orientation:
Minus strand

Genomic View for ENSG00000238685 Gene

Genes around ENSG00000238685 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000238685 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000238685 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000238685 Gene

Proteins for ENSG00000238685 Gene

Post-translational modifications for ENSG00000238685 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000238685 Gene

Domains & Families for ENSG00000238685 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000238685 Gene

Function for ENSG00000238685 Gene

Phenotypes From GWAS Catalog for ENSG00000238685 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000238685 Gene

Localization for ENSG00000238685 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000238685 Gene

Pathways & Interactions for ENSG00000238685 Gene

PathCards logo

SuperPathways for ENSG00000238685 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000238685 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000238685 Gene

Drugs & Compounds for ENSG00000238685 Gene

No Compound Related Data Available

Transcripts for ENSG00000238685 Gene

mRNA/cDNA for ENSG00000238685 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000238685 Gene

No ASD Table

Relevant External Links for ENSG00000238685 Gene

GeneLoc Exon Structure for
ENSG00000238685

Expression for ENSG00000238685 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000238685 Gene

genes like me logo Genes that share expression patterns with ENSG00000238685: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000238685 Gene

Orthologs for ENSG00000238685 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000238685 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACA64 31
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snora78 31
  • 77 (a)
OneToMany
cow
(Bos Taurus)
Mammalia ACA64 31
  • 76 (a)
OneToMany
dog
(Canis familiaris)
Mammalia ACA64 31
  • 76 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia ACA64 31
  • 64 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia ACA64 31 31
  • 63 (a)
ManyToMany
chicken
(Gallus gallus)
Aves ACA64 31
  • 57 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia ACA64 31
  • 51 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ACA64 31 31
  • 50 (a)
ManyToMany
Species where no ortholog for ENSG00000238685 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000238685 Gene

ENSEMBL:
Gene Tree for ENSG00000238685 (if available)
TreeFam:
Gene Tree for ENSG00000238685 (if available)

Paralogs for ENSG00000238685 Gene

No data available for Paralogs for ENSG00000238685 Gene

Variants for ENSG00000238685 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000238685 Gene

Disorders for ENSG00000238685 Gene

No disorders were found for ENSG00000238685 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000238685 Gene

Publications for ENSG00000238685 Gene

No publications were found for ENSG00000238685 Gene.

No data available for Mastermind for ENSG00000238685 Gene

Products for ENSG00000238685 Gene

Sources for ENSG00000238685 Gene