Aliases for ENSG00000238258 Gene

Subcategory (RNA class) for ENSG00000238258 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ENSG00000238258 Gene

  • Novel Transcript, Antisense To NRP1 5
  • NONHSAG005586 92
  • HSALNG0077182 167
  • AL121748.1 5

External Ids for ENSG00000238258 Gene

Previous GeneCards Identifiers for ENSG00000238258 Gene

  • GC10P033500

Summaries for ENSG00000238258 Gene

GeneCards Summary for ENSG00000238258 Gene

ENSG00000238258 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000238258 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000238258 Gene

Genomics for ENSG00000238258 Gene

GeneHancer (GH) Regulatory Elements for ENSG00000238258 Gene

Promoters and enhancers for ENSG00000238258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J033210 Enhancer 0.8 Ensembl ENCODE dbSUPER 500.7 +0.8 826 3 EP300 CEBPB RAD21 MAZ POLR2A CEBPA ENSG00000238258 lnc-ITGB1-4 NRP1
GH10J033232 Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 +26.3 26324 10 TCF12 JUND FOS NR3C1 TEAD1 OSR2 FOSL2 MAFK ATF3 OVOL3 ENSG00000238258 NRP1 lnc-ITGB1-4 piR-55985-018
GH10J033247 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +42.5 42524 12.8 TCF12 JUND FOS TCF7 HINFP FOXA2 GABPA SAP130 FOSL2 POLR2A ENSG00000238258 NRP1 CCDC7 piR-55985-018 lnc-ITGB1-4
GH10J033112 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -95.6 -95640 7 CTCF ZSCAN5C TCF12 JUND FOS EP300 EZH2 CEBPG RAD21 FOSL2 IATPR ENSG00000238258 NRP1 ENSG00000273038 piR-38351-040 lnc-NRP1-4
GH10J033177 Enhancer 1.2 UCNEbase Ensembl ENCODE dbSUPER 11.3 -31.9 -31876 4.4 FOXA2 NR2F2 NFE2 ZFHX2 FOS GATA2 NFE2L2 SMARCA4 HNF4A GATA3 ENSG00000238258 NRP1 ITGB1 L13714-031 HE856205
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000238258 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ENSG00000238258 Gene

Genomic Locations for ENSG00000238258 Gene
chr10:33,211,277-33,213,804
(GRCh38/hg38)
Size:
2,528 bases
Orientation:
Plus strand
chr10:33,500,205-33,502,732
(GRCh37/hg19)
Size:
2,528 bases
Orientation:
Plus strand

Genomic View for ENSG00000238258 Gene

Genes around ENSG00000238258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000238258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000238258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000238258 Gene

Proteins for ENSG00000238258 Gene

Post-translational modifications for ENSG00000238258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000238258 Gene

Domains & Families for ENSG00000238258 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000238258 Gene

Function for ENSG00000238258 Gene

Phenotypes From GWAS Catalog for ENSG00000238258 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000238258 Gene

Localization for ENSG00000238258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000238258 Gene

Pathways & Interactions for ENSG00000238258 Gene

PathCards logo

SuperPathways for ENSG00000238258 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ENSG00000238258 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000238258 Gene

Drugs & Compounds for ENSG00000238258 Gene

No Compound Related Data Available

Transcripts for ENSG00000238258 Gene

mRNA/cDNA for ENSG00000238258 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000238258 Gene

No ASD Table

Relevant External Links for ENSG00000238258 Gene

GeneLoc Exon Structure for
ENSG00000238258

Expression for ENSG00000238258 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000238258 Gene

genes like me logo Genes that share expression patterns with ENSG00000238258: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000238258 Gene

Orthologs for ENSG00000238258 Gene

Evolution for ENSG00000238258 Gene

ENSEMBL:
Gene Tree for ENSG00000238258 (if available)
TreeFam:
Gene Tree for ENSG00000238258 (if available)

No data available for Orthologs for ENSG00000238258 Gene

Paralogs for ENSG00000238258 Gene

No data available for Paralogs for ENSG00000238258 Gene

Variants for ENSG00000238258 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000238258 Gene

Disorders for ENSG00000238258 Gene

No disorders were found for ENSG00000238258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000238258 Gene

Publications for ENSG00000238258 Gene

No publications were found for ENSG00000238258 Gene.

No data available for Mastermind for ENSG00000238258 Gene

Products for ENSG00000238258 Gene

Sources for ENSG00000238258 Gene