Aliases for ENSG00000238246 Gene

Data sources for ENSG00000238246 Gene:

RNA type for ENSG00000238246 Gene

lncRNA

Aliases for ENSG00000238246 Gene

External Ids for ENSG00000238246 Gene

Previous GeneCards Identifiers for ENSG00000238246 Gene

  • GC10M020359

Summaries for ENSG00000238246 Gene

GeneCards Summary for ENSG00000238246 Gene

ENSG00000238246 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000238246 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000238246 Gene

Genomics for ENSG00000238246 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000238246 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J020002 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.7 +87.3 87292 3.5 BCLAF1 SP1 ATF3 YY1 BCL11A CEBPB ZNF592 SIN3A TRIM22 FOXA2 PLXDC2 ENSG00000238246 HSALNG0076533 HSALNG0076532 piR-32214-040
GH10J019929 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +160.8 160783 5.2 JUND ATF3 YY1 MAFF FOXA2 RXRA ZBTB33 MAFK HNF4A FOXA1 ENSG00000238246 piR-31937-020 HSALNG0076533 PLXDC2
GH10J019966 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 +124.3 124283 2.2 SIN3A ATF2 PKNOX1 CHD2 ZNF579 ENSG00000238246 HSALNG0076533 piR-31937-020 PLXDC2
GH10J019979 Enhancer 1 Ensembl ENCODE dbSUPER 10.8 +104.3 104283 19.4 BCL11A RXRA CUX1 HNF4A ZNF24 IKZF1 RAD21 ATF2 TOE1 MAX HSALNG0076533 ENSG00000238246 PLXDC2 HSALNG0076532 piR-32214-040
GH10J019917 Enhancer 1 Ensembl ENCODE dbSUPER 9.9 +171.2 171165 7.2 CEBPA FOXA1 FOXA2 ETV4 RARA FOSL2 CREM FOXP1 BCL6 JUND PLXDC2 ENSG00000238246 piR-31937-020 HSALNG0076533
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000238246 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000238246 Gene

Latest Assembly
chr10:20,070,804-20,091,784
(GRCh38/hg38)
Size:
20,981 bases
Orientation:
Minus strand

Previous Assembly
chr10:20,359,734-20,380,713
(GRCh37/hg19 by Ensembl)
Size:
20,980 bases
Orientation:
Minus strand

Genomic View for ENSG00000238246 Gene

Genes around ENSG00000238246 on UCSC Golden Path with GeneCards custom track
ENSG00000238246 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000238246 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000238246 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000238246 Gene

Proteins for ENSG00000238246 Gene

Post-translational modifications for ENSG00000238246 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000238246 Gene

Domains & Families for ENSG00000238246 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000238246 Gene

Function for ENSG00000238246 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000238246 Gene

Localization for ENSG00000238246 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000238246 Gene

Pathways & Interactions for ENSG00000238246 Gene

PathCards logo

SuperPathways for ENSG00000238246 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000238246 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000238246 Gene

Drugs & Compounds for ENSG00000238246 Gene

No Compound Related Data Available

Transcripts for ENSG00000238246 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000238246 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000061D899_9606 lncRNA 499 4

Ensembl: ENST00000451584 (view in UCSC) ,

LncBook: HSALNT0159694,

LNCipedia: lnc-NEBL-1:1,

NONCODE: NONHSAT011675.2,

ENSG00000238246 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000238246 Gene

No ASD Table

Relevant External Links for ENSG00000238246 Gene

GeneLoc Exon Structure for
ENSG00000238246

No data available for mRNA/cDNA for ENSG00000238246 Gene

Expression for ENSG00000238246 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000238246 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000238246 Gene

This gene is overexpressed in Whole Blood (x6.2).
genes like me logo Genes that share expression patterns with ENSG00000238246: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000238246 Gene

Orthologs for ENSG00000238246 Gene

Evolution for ENSG00000238246 Gene

ENSEMBL:
Gene Tree for ENSG00000238246 (if available)
TreeFam:
Gene Tree for ENSG00000238246 (if available)

No data available for Orthologs for ENSG00000238246 Gene

Paralogs for ENSG00000238246 Gene

No data available for Paralogs for ENSG00000238246 Gene

Variants for ENSG00000238246 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000238246 Gene

Disorders for ENSG00000238246 Gene

Additional Disease Information for ENSG00000238246

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000238246 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000238246 Gene

Publications for ENSG00000238246 Gene

No publications were found for ENSG00000238246 Gene.

No data available for Mastermind for ENSG00000238246 Gene

Products for ENSG00000238246 Gene

Sources for ENSG00000238246 Gene