Aliases for ENSG00000238117 Gene

Data sources for ENSG00000238117 Gene:

Subcategory (RNA class) for ENSG00000238117 Gene

lncRNA

Aliases for ENSG00000238117 Gene

External Ids for ENSG00000238117 Gene

Previous GeneCards Identifiers for ENSG00000238117 Gene

  • GC11M131747

Summaries for ENSG00000238117 Gene

GeneCards Summary for ENSG00000238117 Gene

ENSG00000238117 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000238117 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000238117 Gene

Genomics for ENSG00000238117 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000238117 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J131909 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.2 215 3.4 CTCF SIN3A ZNF341 KLF9 SP2 RAD21 TAF1 ZEB2 EZH2 PATZ1 ENSG00000238117 HSALNG0088297 LOC107984413 NTM HSALNG0088295
GH11J131868 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +43.3 43335 4 CTCF NONO SIN3A TRIM22 NBN ZNF341 SMC3 YY1 SMARCA5 RAD21 ENSG00000238117 NTM HSALNG0088295
GH11J132032 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 10 -121.9 -121943 1.5 JUND NFE2L2 POLR2A ENSG00000238117 NTM HSALNG0088300 ENSG00000224700
GH11J131822 Enhancer 0.8 Ensembl ENCODE 10.4 +85.8 85835 6.2 CEBPA FOXA2 FOXP1 SOX5 YBX1 SOX6 NFIA CREB1 SOX13 MNT ENSG00000238117 HSALNG0088295 NTM
GH11J131875 Enhancer 0.6 Ensembl ENCODE 12.2 +35.5 35481 0.7 ATF2 CREB1 ATF7 CEBPB ENSG00000238117 HSALNG0088295 NTM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000238117 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000238117 Gene

Latest Assembly
chr11:131,863,382-131,911,136
(GRCh38/hg38)
Size:
47,755 bases
Orientation:
Minus strand

Previous Assembly
chr11:131,747,574-131,767,002
(GRCh37/hg19 by Ensembl)
Size:
19,429 bases
Orientation:
Minus strand

Genomic View for ENSG00000238117 Gene

Genes around ENSG00000238117 on UCSC Golden Path with GeneCards custom track
ENSG00000238117 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000238117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000238117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000238117 Gene

Proteins for ENSG00000238117 Gene

Post-translational modifications for ENSG00000238117 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000238117 Gene

Domains & Families for ENSG00000238117 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000238117 Gene

Function for ENSG00000238117 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000238117 Gene

Localization for ENSG00000238117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000238117 Gene

Pathways & Interactions for ENSG00000238117 Gene

PathCards logo

SuperPathways for ENSG00000238117 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000238117 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000238117 Gene

Drugs & Compounds for ENSG00000238117 Gene

No Compound Related Data Available

Transcripts for ENSG00000238117 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000238117 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000039BA12_9606 lncRNA 511 2

Ensembl: ENST00000419440 (view in UCSC) ,

LNCipedia: lnc-OPCML-3:20,

URS0000D5C781_9606 lncRNA 2117 2

LncBook: HSALNT0183659,

LNCipedia: lnc-OPCML-3:15,

URS0000D57B6A_9606 lncRNA 1646 2

LncBook: HSALNT0183662,

LNCipedia: lnc-OPCML-3:12,

URS0000D5A863_9606 lncRNA 7112 1

LNCipedia: lnc-OPCML-3:19,

URS0001BF41FB_9606 lncRNA 7112 1

LncBook: HSALNT0183657,

ENSG00000238117 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000238117 Gene

No ASD Table

Relevant External Links for ENSG00000238117 Gene

GeneLoc Exon Structure for
ENSG00000238117

No data available for mRNA/cDNA for ENSG00000238117 Gene

Expression for ENSG00000238117 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000238117 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000238117 Gene

This gene is overexpressed in Minor Salivary Gland (x17.1), Prostate (x7.5), Brain - Cerebellar Hemisphere (x6.7), and Brain - Cerebellum (x5.4).
genes like me logo Genes that share expression patterns with ENSG00000238117: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000238117 Gene

Orthologs for ENSG00000238117 Gene

Evolution for ENSG00000238117 Gene

ENSEMBL:
Gene Tree for ENSG00000238117 (if available)
TreeFam:
Gene Tree for ENSG00000238117 (if available)

No data available for Orthologs for ENSG00000238117 Gene

Paralogs for ENSG00000238117 Gene

No data available for Paralogs for ENSG00000238117 Gene

Variants for ENSG00000238117 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000238117 Gene

Disorders for ENSG00000238117 Gene

Additional Disease Information for ENSG00000238117

Open Targets Platform
Open Targets Platform

No disorders were found for ENSG00000238117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000238117 Gene

Publications for ENSG00000238117 Gene

No publications were found for ENSG00000238117 Gene.

No data available for Mastermind for ENSG00000238117 Gene

Products for ENSG00000238117 Gene

Sources for ENSG00000238117 Gene