Aliases for ENSG00000236267 Gene

Subcategory (RNA class) for ENSG00000236267 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000236267 Gene

  • Novel Transcript 5
  • NONHSAG009703.2 91
  • HSALNG0087413 164
  • Lnc-APOA4-1 165
  • AP006216.2 5

External Ids for ENSG00000236267 Gene

Previous GeneCards Identifiers for ENSG00000236267 Gene

  • GC11M116683

Summaries for ENSG00000236267 Gene

GeneCards Summary for ENSG00000236267 Gene

ENSG00000236267 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000236267 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000236267 Gene

Genomics for ENSG00000236267 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000236267 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J116813 Enhancer 0.9 Ensembl ENCODE 600.7 +0.2 192 1.6 GATAD2A REST RCOR2 ZIC2 RXRB NR2C1 SP1 GABPA SOX13 TCF7 ENSG00000236267 APOA1 ENSG00000254851 APOA5 ZPR1 BUD13 ENSG00000226645 ENSG00000224077 SIK3 APOA1-AS
GH11J116851 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 12.2 -39.4 -39421 4.9 ZNF629 ZNF692 POLR2A FOXA1 ZNF143 RELA ZIC2 PKNOX1 IKZF2 HDAC1 ENSG00000254851 SIK3 APOA1 APOC3 APOA4 ENSG00000236267 ZPR1 APOA5 ENSG00000224077 BUD13
GH11J116842 Enhancer 0.5 ENCODE 12.6 -29.3 -29257 2.5 SP1 HMBOX1 NR2F2 HNF4A ZNF384 ENSG00000254851 PCSK7 ENSG00000236267 APOA5 ZPR1 BUD13 ENSG00000226645 ENSG00000224077 SIK3 RNF214
GH11J116849 Enhancer 0.2 ENCODE 12.2 -35.9 -35877 0 ENSG00000236267 APOA5 ZPR1 BUD13 ENSG00000226645 ENSG00000224077 SIK3 PCSK7 RNF214 APOA1
GH11J116844 Enhancer 0.2 dbSUPER 12.2 -32.4 -32444 3.6 ENSG00000254851 APOA1 ENSG00000236267 APOA5 ZPR1 BUD13 ENSG00000226645 ENSG00000224077 SIK3 PCSK7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000236267 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000236267 Gene

Genomic Locations for ENSG00000236267 Gene
chr11:116,812,917-116,814,044
(GRCh38/hg38)
Size:
1,128 bases
Orientation:
Minus strand
chr11:116,683,920-116,684,719
(GRCh37/hg19)
Size:
800 bases
Orientation:
Minus strand

Genomic View for ENSG00000236267 Gene

Genes around ENSG00000236267 on UCSC Golden Path with GeneCards custom track
ENSG00000236267 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000236267 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000236267 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000236267 Gene

Proteins for ENSG00000236267 Gene

Post-translational modifications for ENSG00000236267 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000236267 Gene

Domains & Families for ENSG00000236267 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000236267 Gene

Function for ENSG00000236267 Gene

Phenotypes From GWAS Catalog for ENSG00000236267 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000236267 Gene

Localization for ENSG00000236267 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000236267 Gene

Pathways & Interactions for ENSG00000236267 Gene

PathCards logo

SuperPathways for ENSG00000236267 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000236267 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000236267 Gene

Drugs & Compounds for ENSG00000236267 Gene

No Compound Related Data Available

Transcripts for ENSG00000236267 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000236267 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003C50FF_9606 lncRNA 333 2

Ensembl: ENST00000457746 (view in UCSC) ,

LNCipedia: lnc-APOA4-1:1,

URS00008BD8F6_9606 lncRNA 661 3

LncBook: HSALNT0181692,

LNCipedia: lnc-APOA4-1:2,

NONCODE: NONHSAT024357.2,

URS00009BF124_9606 lncRNA 333 2

LncBook: HSALNT0181693,

NONCODE: NONHSAT160789.1,

URS00009C27A9_9606 lncRNA 662 1

NONCODE: NONHSAT160788.1,

ENSG00000236267 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000236267 Gene

No ASD Table

Relevant External Links for ENSG00000236267 Gene

GeneLoc Exon Structure for
ENSG00000236267

No data available for mRNA/cDNA for ENSG00000236267 Gene

Expression for ENSG00000236267 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000236267 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000236267 Gene

This gene is overexpressed in Liver (x26.2) and Testis (x25.5).
genes like me logo Genes that share expression patterns with ENSG00000236267: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000236267 Gene

Orthologs for ENSG00000236267 Gene

Evolution for ENSG00000236267 Gene

ENSEMBL:
Gene Tree for ENSG00000236267 (if available)
TreeFam:
Gene Tree for ENSG00000236267 (if available)

No data available for Orthologs for ENSG00000236267 Gene

Paralogs for ENSG00000236267 Gene

No data available for Paralogs for ENSG00000236267 Gene

Variants for ENSG00000236267 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000236267 Gene

Disorders for ENSG00000236267 Gene

Additional Disease Information for ENSG00000236267

No disorders were found for ENSG00000236267 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000236267 Gene

Publications for ENSG00000236267 Gene

No publications were found for ENSG00000236267 Gene.

No data available for Mastermind for ENSG00000236267 Gene

Products for ENSG00000236267 Gene

Sources for ENSG00000236267 Gene