Aliases for ENSG00000236206 Gene

Subcategory (RNA class) for ENSG00000236206 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ENSG00000236206 Gene

  • Novel Transcript 5
  • NONHSAG003337.2 91
  • HSALNG0008144 164
  • Lnc-MGST3-1 165
  • AL356441.1 5

External Ids for ENSG00000236206 Gene

Previous GeneCards Identifiers for ENSG00000236206 Gene

  • GC01P165567

Summaries for ENSG00000236206 Gene

GeneCards Summary for ENSG00000236206 Gene

ENSG00000236206 is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ENSG00000236206 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ENSG00000236206 Gene

Genomics for ENSG00000236206 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ENSG00000236206 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J165597 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 612 +0.4 432 2.8 SP1 CREB1 PRDM10 ZNF512 RFX1 ZNF692 POLR2A BACH1 FOS JUND ENSG00000236206 RF00005-020 TRK-CTT13-1 ENSG00000215835 RPS13P1 LRRC52 MGST3 lnc-ALDH9A1-3
GH01J165537 Enhancer 0.3 FANTOM5 Ensembl 9.3 -60.2 -60168 0.8 RXRG ENSG00000236206 LRRC52 ENSG00000230748 lnc-LRRC52-1 LRRC52-AS1
GH01J165601 Enhancer 0.9 Ensembl ENCODE 0.7 +3.5 3532 1.8 CTCF JUND ZNF143 PRDM1 REST RAD21 KAT8 RCOR1 TRIM22 YY1 MGST3 LRRC52 RXRG ENSG00000236206 lnc-ALDH9A1-3
GH01J165610 Enhancer 0.5 Ensembl 0.4 +13.2 13239 0.4 CTBP1 ZNF316 GATA3 DPF2 MAFK MGST3 TMCO1-AS1 TMCO1 ENSG00000236206 lnc-ALDH9A1-3 LRRC52
GH01J165616 Enhancer 0.4 Ensembl 0.4 +19.0 19032 1.2 FOXA1 NRF1 GATA3 MGST3 LRRC52 lnc-ALDH9A1-3 ENSG00000236206
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ENSG00000236206 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ENSG00000236206 Gene

Genomic Locations for ENSG00000236206 Gene
chr1:165,597,769-165,624,084
(GRCh38/hg38)
Size:
26,316 bases
Orientation:
Plus strand
chr1:165,567,700-165,592,568
(GRCh37/hg19)
Size:
24,869 bases
Orientation:
Plus strand

Genomic View for ENSG00000236206 Gene

Genes around ENSG00000236206 on UCSC Golden Path with GeneCards custom track
ENSG00000236206 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ENSG00000236206 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000236206 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000236206 Gene

Proteins for ENSG00000236206 Gene

Post-translational modifications for ENSG00000236206 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000236206 Gene

Domains & Families for ENSG00000236206 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ENSG00000236206 Gene

Function for ENSG00000236206 Gene

Phenotypes From GWAS Catalog for ENSG00000236206 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000236206 Gene

Localization for ENSG00000236206 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ENSG00000236206 Gene

Pathways & Interactions for ENSG00000236206 Gene

PathCards logo

SuperPathways for ENSG00000236206 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ENSG00000236206 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ENSG00000236206 Gene

Drugs & Compounds for ENSG00000236206 Gene

No Compound Related Data Available

Transcripts for ENSG00000236206 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ENSG00000236206 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004318D1_9606 lncRNA 492 3

Ensembl: ENST00000452618 (view in UCSC) ,

LNCipedia: lnc-MGST3-1:1,

NONCODE: NONHSAT007322.2,

URS0000EEBC27_9606 lncRNA 1150 1

Ensembl: ENST00000659914 (view in UCSC) ,

URS0000EEC6D8_9606 lncRNA 963 1

Ensembl: ENST00000654631 (view in UCSC) ,

URS0000EF0257_9606 lncRNA 885 1

Ensembl: ENST00000669787 (view in UCSC) ,

URS00008B4C34_9606 lncRNA 2278 3

LncBook: HSALNT0016885,

LNCipedia: lnc-MGST3-1:2,

NONCODE: NONHSAT007321.2,

ENSG00000236206 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000236206 Gene

No ASD Table

Relevant External Links for ENSG00000236206 Gene

GeneLoc Exon Structure for
ENSG00000236206

No data available for mRNA/cDNA for ENSG00000236206 Gene

Expression for ENSG00000236206 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ENSG00000236206 Gene

mRNA differential expression in normal tissues according to GTEx for ENSG00000236206 Gene

This gene is overexpressed in Testis (x22.2) and Pituitary (x6.0).
genes like me logo Genes that share expression patterns with ENSG00000236206: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000236206 Gene

Orthologs for ENSG00000236206 Gene

Evolution for ENSG00000236206 Gene

ENSEMBL:
Gene Tree for ENSG00000236206 (if available)
TreeFam:
Gene Tree for ENSG00000236206 (if available)

No data available for Orthologs for ENSG00000236206 Gene

Paralogs for ENSG00000236206 Gene

No data available for Paralogs for ENSG00000236206 Gene

Variants for ENSG00000236206 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for ENSG00000236206 Gene

Disorders for ENSG00000236206 Gene

Additional Disease Information for ENSG00000236206

No disorders were found for ENSG00000236206 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ENSG00000236206 Gene

Publications for ENSG00000236206 Gene

No publications were found for ENSG00000236206 Gene.

No data available for Mastermind for ENSG00000236206 Gene

Products for ENSG00000236206 Gene

Sources for ENSG00000236206 Gene